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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11937438	G-A	HET
SBS	Chr1	2166522	T-A	Homo
SBS	Chr1	25464409	A-G	Homo
SBS	Chr1	7830247	G-A	HET
SBS	Chr10	5206408	C-T	HET
SBS	Chr10	8420573	C-G	HET
SBS	Chr10	8828280	T-C	HET
SBS	Chr12	14995603	C-T	HET
SBS	Chr12	26531465	A-G	HET
SBS	Chr12	3193163	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06580
SBS	Chr12	9655062	C-T	HET
SBS	Chr12	9655063	C-T	HET
SBS	Chr2	30772309	A-G	HET
SBS	Chr2	429140	T-A	HET
SBS	Chr3	27956098	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g49070
SBS	Chr4	10218997	T-C	HET
SBS	Chr4	7557454	T-A	Homo
SBS	Chr4	835227	G-A	Homo
SBS	Chr5	12167148	A-C	HET
SBS	Chr5	17705465	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g30560
SBS	Chr5	5547636	G-A	HET
SBS	Chr6	27200871	G-A	HET
SBS	Chr7	17706239	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g30040
SBS	Chr7	17706240	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g30040
SBS	Chr7	28226872	T-C	HET
SBS	Chr8	11717234	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19600
SBS	Chr8	12437179	C-T	HET
SBS	Chr8	17308591	C-T	Homo
SBS	Chr9	10029977	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16400
SBS	Chr9	8482195	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14360

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	301023	301024	1
Deletion	Chr7	426891	426896	5	LOC_Os07g01710
Deletion	Chr11	8502098	8502102	4
Deletion	Chr12	11700001	11721000	20999	4
Deletion	Chr2	11874013	11874014	1
Deletion	Chr7	13151001	13174000	22999	2
Deletion	Chr6	14602021	14602022	1
Deletion	Chr12	15425789	15425790	1	LOC_Os12g26400
Deletion	Chr1	17687057	17687063	6
Deletion	Chr2	19780001	19901000	120999	19
Deletion	Chr2	21672869	21672871	2	LOC_Os02g36050
Deletion	Chr2	24631015	24631016	1	LOC_Os02g40610
Deletion	Chr6	30358871	30358877	6	LOC_Os06g50120
Deletion	Chr1	36411661	36411678	17
Deletion	Chr1	39558581	39558582	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	17922061	17922062	2
Insertion	Chr12	8264472	8264479	8
Insertion	Chr2	35735831	35735831	1	LOC_Os02g58430
Insertion	Chr5	2235162	2235162	1	LOC_Os05g04730
Insertion	Chr6	9908046	9908047	2
Insertion	Chr7	6526429	6526429	1
Insertion	Chr8	8337667	8337790	124

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	13151125	13257615	2
Inversion	Chr7	13173614	13257629	LOC_Os07g23470
Inversion	Chr2	19612211	19781626
Inversion	Chr8	25631695	25632113
Inversion	Chr8	25632006	25632476
Inversion	Chr1	38727591	38755335	LOC_Os01g66730
Inversion	Chr1	38727599	38755341	LOC_Os01g66730

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	987054	Chr2	19285131
Translocation	Chr6	1179230	Chr3	7386250
Translocation	Chr3	13648917	Chr1	34373366
Translocation	Chr3	14255790	Chr2	17025208	2
Translocation	Chr4	29635211	Chr1	38797770

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