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Mutant Information |
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Mutant Name | FN4037-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4037-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 30
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 2166522 | T-A | Homo | ||
SBS | Chr1 | 7830247 | G-A | HET | ||
SBS | Chr1 | 11937438 | G-A | HET | ||
SBS | Chr1 | 25464409 | A-G | Homo | ||
SBS | Chr2 | 429140 | T-A | HET | ||
SBS | Chr2 | 30772309 | A-G | HET | ||
SBS | Chr3 | 27956098 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g49070 |
SBS | Chr4 | 835227 | G-A | Homo | ||
SBS | Chr4 | 7557454 | T-A | Homo | ||
SBS | Chr4 | 10218997 | T-C | HET | ||
SBS | Chr5 | 5547636 | G-A | HET | ||
SBS | Chr5 | 12167148 | A-C | HET | ||
SBS | Chr5 | 17705465 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g30560 |
SBS | Chr6 | 27200871 | G-A | HET | ||
SBS | Chr7 | 17706239 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g30040 |
SBS | Chr7 | 17706240 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g30040 |
SBS | Chr7 | 28226872 | T-C | HET | ||
SBS | Chr8 | 11717234 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g19600 |
SBS | Chr8 | 12437179 | C-T | HET | ||
SBS | Chr8 | 17308591 | C-T | Homo | ||
SBS | Chr9 | 8482195 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14360 |
SBS | Chr9 | 10029977 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g16400 |
SBS | Chr10 | 5206408 | C-T | HET | ||
SBS | Chr10 | 8420573 | C-G | HET | ||
SBS | Chr10 | 8828280 | T-C | HET | ||
SBS | Chr12 | 3193163 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g06580 |
SBS | Chr12 | 9655062 | C-T | HET | ||
SBS | Chr12 | 9655063 | C-T | HET | ||
SBS | Chr12 | 14995603 | C-T | HET | ||
SBS | Chr12 | 26531465 | A-G | HET |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr9 | 301023 | 301024 | 1 | |
Deletion | Chr7 | 426891 | 426896 | 5 | LOC_Os07g01710 |
Deletion | Chr11 | 8502098 | 8502102 | 4 | |
Deletion | Chr12 | 11700001 | 11721000 | 20999 | 4 |
Deletion | Chr2 | 11874013 | 11874014 | 1 | |
Deletion | Chr7 | 13151001 | 13174000 | 22999 | 2 |
Deletion | Chr6 | 14602021 | 14602022 | 1 | |
Deletion | Chr12 | 15425789 | 15425790 | 1 | LOC_Os12g26400 |
Deletion | Chr1 | 17687057 | 17687063 | 6 | |
Deletion | Chr2 | 19780001 | 19901000 | 120999 | 19 |
Deletion | Chr2 | 21672869 | 21672871 | 2 | LOC_Os02g36050 |
Deletion | Chr2 | 24631015 | 24631016 | 1 | LOC_Os02g40610 |
Deletion | Chr6 | 30358871 | 30358877 | 6 | LOC_Os06g50120 |
Deletion | Chr1 | 36411661 | 36411678 | 17 | |
Deletion | Chr1 | 39558581 | 39558582 | 1 |
Insertions: 7
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 9908046 | 9908047 | 2 | |
Insertion | Chr10 | 17922061 | 17922062 | 2 | |
Insertion | Chr2 | 35735831 | 35735831 | 1 | LOC_Os02g58430 |
Insertion | Chr5 | 2235162 | 2235162 | 1 | LOC_Os05g04730 |
Insertion | Chr7 | 6526429 | 6526429 | 1 | |
Insertion | Chr8 | 8337667 | 8337790 | 124 | |
Insertion | Chr12 | 8264472 | 8264479 | 8 |
Inversions: 7
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr7 | 13151125 | 13257615 | 2 |
Inversion | Chr7 | 13173614 | 13257629 | LOC_Os07g23470 |
Inversion | Chr2 | 19612211 | 19781626 | |
Inversion | Chr8 | 25631695 | 25632113 | |
Inversion | Chr8 | 25632006 | 25632476 | |
Inversion | Chr1 | 38727591 | 38755335 | LOC_Os01g66730 |
Inversion | Chr1 | 38727599 | 38755341 | LOC_Os01g66730 |
Translocations: 5
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 987054 | Chr2 | 19285131 | |
Translocation | Chr6 | 1179230 | Chr3 | 7386250 | |
Translocation | Chr3 | 13648917 | Chr1 | 34373366 | |
Translocation | Chr3 | 14255790 | Chr2 | 17025208 | 2 |
Translocation | Chr4 | 29635211 | Chr1 | 38797770 |