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| Mutant Information |
|---|
| Mutant Name | FN4038-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4038-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13119618 | T-A | Homo | ||
| SBS | Chr1 | 26489809 | A-G | HET | ||
| SBS | Chr1 | 39940092 | G-A | HET | ||
| SBS | Chr1 | 45884 | C-T | Homo | ||
| SBS | Chr11 | 10370491 | A-T | Homo | ||
| SBS | Chr11 | 19280800 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g32650 |
| SBS | Chr12 | 13259548 | C-T | Homo | ||
| SBS | Chr2 | 30977498 | C-T | HET | ||
| SBS | Chr2 | 9146954 | G-A | HET | ||
| SBS | Chr3 | 18336727 | C-T | HET | ||
| SBS | Chr4 | 21215831 | G-A | Homo | ||
| SBS | Chr4 | 26071182 | C-T | HET | ||
| SBS | Chr4 | 9324587 | G-T | HET | ||
| SBS | Chr5 | 25560691 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g43920 |
| SBS | Chr6 | 4519301 | A-G | Homo | ||
| SBS | Chr6 | 8212931 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g14590 |
| SBS | Chr7 | 12779400 | T-A | Homo | ||
| SBS | Chr7 | 24600361 | C-T | Homo | ||
| SBS | Chr8 | 25256225 | A-T | HET | ||
| SBS | Chr8 | 5194750 | G-A | Homo | ||
| SBS | Chr8 | 6999982 | G-C | HET | ||
| SBS | Chr8 | 9753069 | G-A | Homo | ||
| SBS | Chr9 | 10129731 | A-T | HET | ||
| SBS | Chr9 | 2081378 | C-A | HET | ||
| SBS | Chr9 | 2959026 | C-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2365258 | 2365273 | 15 | |
| Deletion | Chr4 | 4220001 | 4243000 | 22999 | 5 |
| Deletion | Chr8 | 7121369 | 7121370 | 1 | |
| Deletion | Chr9 | 9342147 | 9342150 | 3 | |
| Deletion | Chr1 | 12038779 | 12038781 | 2 | LOC_Os01g21530 |
| Deletion | Chr12 | 17862547 | 17862553 | 6 | |
| Deletion | Chr1 | 21131171 | 21131173 | 2 | |
| Deletion | Chr6 | 23943184 | 23943185 | 1 | |
| Deletion | Chr8 | 25925333 | 25925339 | 6 | |
| Deletion | Chr1 | 35639457 | 35639459 | 2 | LOC_Os01g61610 |
No Insertion
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 2077002 | 2252831 | |
| Inversion | Chr10 | 2077028 | 2253212 | |
| Inversion | Chr2 | 19086295 | 19294680 | LOC_Os02g32570 |
| Inversion | Chr2 | 19086301 | 19294971 | LOC_Os02g32570 |
| Inversion | Chr3 | 25938606 | 25943049 | LOC_Os03g45920 |
| Inversion | Chr3 | 25938607 | 25943047 | LOC_Os03g45920 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 522593 | Chr2 | 19294681 | 2 |
| Translocation | Chr10 | 2252838 | Chr3 | 17421346 | |
| Translocation | Chr10 | 2253207 | Chr3 | 17421336 | |
| Translocation | Chr5 | 6364271 | Chr4 | 16097959 | |
| Translocation | Chr12 | 18301410 | Chr6 | 5183820 | LOC_Os12g30490 |
| Translocation | Chr11 | 25230083 | Chr4 | 4252587 | LOC_Os04g07990 |
| Translocation | Chr11 | 25230090 | Chr4 | 4243830 | LOC_Os04g07970 |