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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1530015	C-T	HET
SBS	Chr1	23460434	C-T	Homo
SBS	Chr1	3393632	G-A	HET
SBS	Chr1	5640828	G-C	HET
SBS	Chr10	18123496	G-C	HET
SBS	Chr10	19417671	G-C	HET
SBS	Chr10	19985757	G-A	HET
SBS	Chr11	23448010	G-C	HET
SBS	Chr11	24736365	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41260
SBS	Chr11	4043066	C-T	Homo
SBS	Chr12	13811237	G-T	Homo
SBS	Chr2	30434444	T-A	HET
SBS	Chr3	11910581	C-T	HET
SBS	Chr3	14611990	A-T	HET
SBS	Chr3	35132380	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g61980
SBS	Chr3	9696503	G-A	HET
SBS	Chr4	10984925	G-T	HET	STOP_GAINED	LOC_Os04g19684
SBS	Chr4	22250360	T-A	HET
SBS	Chr4	27596865	C-A	HET
SBS	Chr4	32019232	T-A	HET
SBS	Chr4	32019233	T-A	HET
SBS	Chr4	5238881	A-T	HET
SBS	Chr5	14539972	C-T	HET
SBS	Chr5	17207980	G-A	HET
SBS	Chr5	24282307	A-G	HET
SBS	Chr6	30908786	G-T	HET
SBS	Chr7	20783800	G-A	Homo
SBS	Chr7	3273413	T-C	HET
SBS	Chr8	22901525	A-G	HET
SBS	Chr9	110515	A-C	HET
SBS	Chr9	110516	G-T	HET
SBS	Chr9	13987649	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23540
SBS	Chr9	16689992	G-T	HET

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	946421	946424	3	LOC_Os07g02620
Deletion	Chr7	1057996	1058005	9
Deletion	Chr2	1533208	1533211	3
Deletion	Chr1	1819920	1819922	2
Deletion	Chr12	4791479	4791491	12
Deletion	Chr2	7053905	7053906	1
Deletion	Chr11	7360767	7360774	7
Deletion	Chr1	7426216	7426227	11
Deletion	Chr12	9280325	9280326	1
Deletion	Chr11	12204777	12204843	66
Deletion	Chr11	13631614	13631623	9
Deletion	Chr7	13857543	13857553	10
Deletion	Chr3	14630406	14630414	8
Deletion	Chr2	14920447	14920452	5
Deletion	Chr7	15446001	15563000	116999	15
Deletion	Chr2	18758570	18758571	1
Deletion	Chr4	20452273	20452281	8
Deletion	Chr7	21173223	21173229	6
Deletion	Chr3	21960181	21960188	7	LOC_Os03g39540
Deletion	Chr8	22451380	22451382	2
Deletion	Chr11	26727910	26727911	1
Deletion	Chr4	26986227	26986230	3
Deletion	Chr3	30297621	30297622	1
Deletion	Chr1	31199626	31199635	9

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	21129520	21129533	14
Insertion	Chr11	25275166	25275273	108
Insertion	Chr4	15278204	15278207	4

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	525592	1030444
Inversion	Chr8	525604	1030448
Inversion	Chr8	24118321	24380693	2
Inversion	Chr8	24118379	24380734	2
Inversion	Chr6	24912926	24913325	LOC_Os06g41570

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16672578	Chr9	11543974	LOC_Os11g28770
Translocation	Chr3	19488771	Chr1	17033329	LOC_Os03g34220

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