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| Mutant Information |
|---|
| Mutant Name | FN4044-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4044-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20269952 | C-A | HET | ||
| SBS | Chr1 | 7515657 | G-A | HET | ||
| SBS | Chr11 | 12003577 | G-A | HET | ||
| SBS | Chr12 | 15089061 | G-T | HET | ||
| SBS | Chr12 | 23198348 | C-T | Homo | ||
| SBS | Chr12 | 26578008 | G-A | HET | ||
| SBS | Chr2 | 16840117 | T-A | HET | ||
| SBS | Chr2 | 32515114 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g53130 |
| SBS | Chr2 | 33150057 | T-C | Homo | ||
| SBS | Chr3 | 14415966 | C-T | HET | ||
| SBS | Chr3 | 20293576 | C-T | HET | ||
| SBS | Chr3 | 29015009 | C-T | HET | ||
| SBS | Chr3 | 29267023 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g51140 |
| SBS | Chr3 | 30485014 | C-G | HET | ||
| SBS | Chr3 | 34403055 | G-A | HET | ||
| SBS | Chr4 | 189169 | T-C | Homo | ||
| SBS | Chr4 | 23006981 | G-A | Homo | ||
| SBS | Chr4 | 23006985 | G-A | Homo | ||
| SBS | Chr5 | 20184009 | C-T | HET | ||
| SBS | Chr5 | 26212372 | G-T | Homo | ||
| SBS | Chr5 | 27593380 | C-T | Homo | ||
| SBS | Chr5 | 27593381 | C-T | Homo | ||
| SBS | Chr6 | 25348553 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g42220 |
| SBS | Chr7 | 17885440 | G-C | HET | ||
| SBS | Chr7 | 29130653 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g48650 |
| SBS | Chr8 | 9913734 | T-A | HET | START_LOST | LOC_Os08g16250 |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 1634507 | 1634508 | 1 | LOC_Os04g03700 |
| Deletion | Chr7 | 6896681 | 6896682 | 1 | LOC_Os07g12270 |
| Deletion | Chr3 | 7721785 | 7721786 | 1 | |
| Deletion | Chr6 | 9359095 | 9359096 | 1 | |
| Deletion | Chr7 | 10984872 | 10984873 | 1 | LOC_Os07g18570 |
| Deletion | Chr9 | 20671297 | 20671301 | 4 | |
| Deletion | Chr11 | 23575001 | 23599000 | 23999 | 6 |
| Deletion | Chr1 | 39492207 | 39492211 | 4 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 13871980 | 13871981 | 2 |
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 570994 | Chr8 | 24380915 | LOC_Os08g38560 |
| Translocation | Chr12 | 7765420 | Chr1 | 1946542 | |
| Translocation | Chr10 | 10189304 | Chr4 | 14595105 | |
| Translocation | Chr9 | 11544000 | Chr3 | 25613147 | |
| Translocation | Chr10 | 12226073 | Chr1 | 5142466 | |
| Translocation | Chr8 | 14367863 | Chr4 | 129466 | |
| Translocation | Chr4 | 28176102 | Chr1 | 3437700 |