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| Mutant Information |
|---|
| Mutant Name | FN4046-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4046-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11348987 | C-T | HET | ||
| SBS | Chr1 | 13916769 | G-C | HET | ||
| SBS | Chr1 | 14944444 | T-A | HET | ||
| SBS | Chr1 | 34826695 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g60220 |
| SBS | Chr1 | 42610332 | T-A | Homo | ||
| SBS | Chr10 | 12427593 | A-G | HET | ||
| SBS | Chr11 | 15598277 | G-A | Homo | ||
| SBS | Chr12 | 10494888 | G-T | HET | ||
| SBS | Chr12 | 15089995 | G-T | HET | ||
| SBS | Chr12 | 22147600 | T-C | HET | ||
| SBS | Chr12 | 7204799 | C-T | Homo | ||
| SBS | Chr2 | 10927418 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g18730 |
| SBS | Chr2 | 21848874 | T-A | Homo | ||
| SBS | Chr3 | 13816384 | C-T | Homo | ||
| SBS | Chr3 | 19660020 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g35454 |
| SBS | Chr3 | 28606885 | A-T | HET | ||
| SBS | Chr3 | 4030001 | A-C | Homo | ||
| SBS | Chr4 | 27849749 | C-T | HET | ||
| SBS | Chr4 | 5613736 | G-A | Homo | ||
| SBS | Chr5 | 12922910 | C-T | HET | ||
| SBS | Chr5 | 18483902 | C-T | HET | ||
| SBS | Chr5 | 25886855 | A-T | HET | ||
| SBS | Chr5 | 26661700 | A-C | HET | ||
| SBS | Chr5 | 27607204 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g48160 |
| SBS | Chr6 | 16818322 | G-A | HET | ||
| SBS | Chr6 | 29516861 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g48770 |
| SBS | Chr7 | 16541140 | A-G | HET | ||
| SBS | Chr7 | 7853027 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g13680 |
| SBS | Chr8 | 28139655 | C-T | HET | ||
| SBS | Chr8 | 7717197 | T-C | HET | ||
| SBS | Chr8 | 8249505 | C-G | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 148401 | 148402 | 1 | LOC_Os11g01270 |
| Deletion | Chr1 | 6209001 | 6219000 | 9999 | |
| Deletion | Chr4 | 11022831 | 11022833 | 2 | LOC_Os04g19730 |
| Deletion | Chr7 | 11308437 | 11308438 | 1 | |
| Deletion | Chr4 | 12941452 | 12941459 | 7 | |
| Deletion | Chr7 | 19494584 | 19494589 | 5 | |
| Deletion | Chr3 | 32226978 | 32226986 | 8 | LOC_Os03g56572 |
| Deletion | Chr4 | 34654489 | 34654498 | 9 | LOC_Os04g58180 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 4219571 | 4219572 | 2 | |
| Insertion | Chr2 | 2711716 | 2711716 | 1 | |
| Insertion | Chr3 | 823631 | 823640 | 10 | LOC_Os03g02350 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 13641724 | 14135157 | LOC_Os11g24800 |
| Inversion | Chr11 | 13641730 | 14135164 | LOC_Os11g24800 |
| Inversion | Chr4 | 19713060 | 20014278 | 2 |
| Inversion | Chr4 | 20014287 | 20129360 | 2 |
| Inversion | Chr5 | 26844584 | 26844752 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 300552 | Chr3 | 12783516 | 2 |
| Translocation | Chr12 | 5440868 | Chr9 | 10360788 | |
| Translocation | Chr10 | 7685655 | Chr6 | 5168933 | 2 |
| Translocation | Chr11 | 13414267 | Chr1 | 38188891 | LOC_Os11g23736 |
| Translocation | Chr11 | 13417189 | Chr1 | 38188902 | |
| Translocation | Chr11 | 27297220 | Chr1 | 11187998 |