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| Mutant Information |
|---|
| Mutant Name | FN4049-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4049-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1629260 | G-A | Homo | ||
| SBS | Chr1 | 21079068 | C-A | Homo | ||
| SBS | Chr10 | 7209217 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g13350 |
| SBS | Chr11 | 15506832 | T-A | HET | ||
| SBS | Chr11 | 25038504 | T-A | HET | ||
| SBS | Chr12 | 10323357 | T-C | Homo | ||
| SBS | Chr12 | 10844427 | G-A | Homo | ||
| SBS | Chr12 | 16759637 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g28340 |
| SBS | Chr12 | 19447421 | T-A | Homo | ||
| SBS | Chr2 | 11488206 | T-C | Homo | ||
| SBS | Chr2 | 14329423 | T-A | HET | ||
| SBS | Chr2 | 23962042 | C-T | HET | ||
| SBS | Chr2 | 2476210 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g05180 |
| SBS | Chr3 | 15452947 | G-T | HET | ||
| SBS | Chr3 | 22843833 | C-A | Homo | ||
| SBS | Chr3 | 33122697 | C-T | Homo | ||
| SBS | Chr4 | 26826213 | A-G | HET | ||
| SBS | Chr4 | 29415698 | C-T | HET | ||
| SBS | Chr4 | 7266864 | C-T | Homo | ||
| SBS | Chr6 | 27003778 | T-A | HET | ||
| SBS | Chr7 | 10608673 | C-T | Homo | ||
| SBS | Chr7 | 15290354 | A-T | HET | ||
| SBS | Chr8 | 10837603 | C-T | HET | ||
| SBS | Chr8 | 15095844 | C-T | HET | ||
| SBS | Chr8 | 22197560 | A-G | HET | ||
| SBS | Chr8 | 23959801 | A-T | HET | ||
| SBS | Chr8 | 23959802 | A-T | HET | ||
| SBS | Chr9 | 2715718 | A-G | HET | ||
| SBS | Chr9 | 8873948 | G-T | Homo | ||
| SBS | Chr9 | 9083980 | A-G | HET |
Deletions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2411972 | 2411989 | 17 | LOC_Os12g05350 |
| Deletion | Chr4 | 13321886 | 13321889 | 3 | |
| Deletion | Chr6 | 23369879 | 23369882 | 3 | |
| Deletion | Chr4 | 30670001 | 30706000 | 35999 | 9 |
| Deletion | Chr1 | 35974932 | 35974935 | 3 |
Insertions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 38346317 | 38346317 | 1 | |
| Insertion | Chr11 | 13568674 | 13568677 | 4 | |
| Insertion | Chr11 | 18079442 | 18079442 | 1 | |
| Insertion | Chr2 | 25832355 | 25832356 | 2 | |
| Insertion | Chr2 | 361573 | 361576 | 4 | LOC_Os02g01630 |
| Insertion | Chr3 | 5872731 | 5872732 | 2 | |
| Insertion | Chr5 | 11172186 | 11172187 | 2 | LOC_Os05g19240 |
| Insertion | Chr6 | 15483789 | 15483959 | 171 | |
| Insertion | Chr8 | 11049434 | 11049434 | 1 | |
| Insertion | Chr8 | 11160608 | 11160608 | 1 | LOC_Os08g18210 |
| Insertion | Chr9 | 4160493 | 4160630 | 138 |
No Inversion
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 4400271 | Chr6 | 9639805 | LOC_Os06g16710 |
| Translocation | Chr11 | 4963585 | Chr1 | 37745614 | LOC_Os01g65030 |
| Translocation | Chr9 | 7229983 | Chr3 | 32905402 | |
| Translocation | Chr5 | 10107247 | Chr4 | 3989013 | |
| Translocation | Chr7 | 10216067 | Chr3 | 754377 | LOC_Os03g02240 |
| Translocation | Chr2 | 11488436 | Chr1 | 29136498 | |
| Translocation | Chr2 | 11488445 | Chr1 | 29138996 | |
| Translocation | Chr11 | 22922301 | Chr6 | 1553353 |