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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36682428	T-G	HET	INTERGENIC
SBS	Chr1	36685207	A-G	HET	SYNONYMOUS_CODING
SBS	Chr2	13599483	G-A	HET	INTERGENIC
SBS	Chr2	20314594	A-T	HET	INTRON
SBS	Chr2	20537786	G-A	HET	INTRON
SBS	Chr2	20895932	T-C	HET	INTERGENIC
SBS	Chr2	28420769	C-A	HET	INTERGENIC
SBS	Chr2	28827796	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	28083227	G-C	HET	INTERGENIC
SBS	Chr4	1501032	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	6411953	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11680
SBS	Chr5	9171195	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g16210
SBS	Chr6	13948526	A-T	HET	INTRON
SBS	Chr6	19758215	G-A	HET	INTERGENIC
SBS	Chr6	25123683	C-T	HET	INTRON
SBS	Chr7	7498752	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	16039384	T-G	HET	INTERGENIC
SBS	Chr7	21229462	G-A	HOMO	INTERGENIC
SBS	Chr7	21229463	G-A	HOMO	INTERGENIC
SBS	Chr8	6306647	C-A	HET	INTERGENIC
SBS	Chr8	7611204	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr8	15720756	C-T	HOMO	INTERGENIC
SBS	Chr8	17895337	G-A	HET	INTERGENIC
SBS	Chr8	23594388	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	28178644	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g44860
SBS	Chr9	347565	T-A	HET	INTERGENIC
SBS	Chr9	347566	C-A	HET	INTERGENIC
SBS	Chr9	347567	G-A	HET	INTERGENIC
SBS	Chr10	6131363	T-A	HET	INTERGENIC
SBS	Chr10	12604490	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g24560
SBS	Chr11	23568442	A-T	HET	INTRON
SBS	Chr11	24288323	C-T	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1225733	1225739	6
Deletion	Chr11	2753281	2753310	29
Deletion	Chr5	4111461	4159640	48179	6
Deletion	Chr1	4298774	4298775	1
Deletion	Chr9	7820562	7820563	1	LOC_Os09g13510
Deletion	Chr9	10201913	10201922	9
Deletion	Chr10	15358512	15358518	6
Deletion	Chr6	16901249	16901251	2
Deletion	Chr10	18356279	18356286	7
Deletion	Chr8	20226273	20226281	8	LOC_Os08g32660
Deletion	Chr3	20757407	20757408	1	LOC_Os03g37430
Deletion	Chr7	23570578	23570580	2
Deletion	Chr11	23914870	23914875	5
Deletion	Chr1	25604001	26207000	603000	88
Deletion	Chr7	26205293	26205320	27
Deletion	Chr1	26218001	26568000	350000	49
Deletion	Chr4	29979051	29979055	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	25125213	25125216	4
Insertion	Chr7	1455532	1455543	12
Insertion	Chr7	4024330	4024330	1	LOC_Os07g07974

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3647710	4159630	LOC_Os05g06970
Inversion	Chr1	23463609	23488241	LOC_Os01g41500

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	13355791	Chr2	18616566
Translocation	Chr11	15785784	Chr2	16753852

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