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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5584190	G-A	HET
SBS	Chr1	16995742	C-T	HET
SBS	Chr1	27274527	C-T	HET
SBS	Chr1	27330076	C-T	HET
SBS	Chr1	29595932	C-A	HET
SBS	Chr1	31330734	G-T	HET
SBS	Chr1	34846535	T-A	Homo
SBS	Chr1	38609642	C-G	Homo
SBS	Chr2	8894771	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g15770
SBS	Chr3	725132	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g02170
SBS	Chr3	2623303	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05350
SBS	Chr4	6829844	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g12380
SBS	Chr4	14117316	G-A	Homo
SBS	Chr4	21948932	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g36000
SBS	Chr5	17516622	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g30220
SBS	Chr6	22220947	G-A	Homo
SBS	Chr7	2523944	G-A	Homo
SBS	Chr7	7335233	G-A	Homo
SBS	Chr7	9676721	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g16510
SBS	Chr7	10465665	C-A	Homo
SBS	Chr8	449285	C-T	Homo	STOP_GAINED	LOC_Os08g01740
SBS	Chr8	3363762	G-T	Homo
SBS	Chr8	3363763	A-T	Homo
SBS	Chr8	12550635	G-A	HET
SBS	Chr9	11219695	T-C	HET
SBS	Chr9	15491763	T-C	HET
SBS	Chr10	6828349	A-T	Homo
SBS	Chr11	13431771	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g23750
SBS	Chr11	26862940	A-T	Homo
SBS	Chr12	3410660	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06980
SBS	Chr12	14878838	T-C	HET

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1944574	1944575	1
Deletion	Chr6	2216295	2216297	2
Deletion	Chr9	3065061	3065068	7
Deletion	Chr12	3627611	3627613	2
Deletion	Chr5	4449573	4449575	2	LOC_Os05g08160
Deletion	Chr11	4462806	4462807	1
Deletion	Chr7	7034851	7034852	1
Deletion	Chr7	7335219	7335222	3
Deletion	Chr7	9213167	9213169	2
Deletion	Chr2	12785542	12785547	5
Deletion	Chr2	14174074	14174075	1	LOC_Os02g24460
Deletion	Chr8	15790834	15790839	5
Deletion	Chr10	17016584	17016603	19
Deletion	Chr12	18869999	18870000	1
Deletion	Chr9	18888379	18888384	5
Deletion	Chr1	19173516	19173520	4
Deletion	Chr1	20070174	20070178	4	LOC_Os01g36250
Deletion	Chr9	20571172	20571178	6
Deletion	Chr5	21232441	21232445	4
Deletion	Chr7	22017172	22017185	13	LOC_Os07g36750
Deletion	Chr4	23426334	23426342	8
Deletion	Chr6	26670568	26670601	33
Deletion	Chr2	30585147	30585149	2
Deletion	Chr1	31887896	31887905	9
Deletion	Chr1	40411237	40411242	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	2382300	2382300	1	LOC_Os04g04940
Insertion	Chr6	11083212	11083212	1
Insertion	Chr3	13877484	13877485	2

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1081528	Chr3	21347597
Translocation	Chr6	8875925	Chr2	18782950	LOC_Os02g31310
Translocation	Chr9	11307386	Chr6	22141205
Translocation	Chr5	25574137	Chr4	24171125

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