Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN4051-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4051-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18845021 | C-T | Homo | ||
| SBS | Chr10 | 19594495 | C-T | Homo | ||
| SBS | Chr10 | 6258092 | G-T | HET | ||
| SBS | Chr11 | 27170990 | G-A | HET | ||
| SBS | Chr12 | 14259175 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g24870 |
| SBS | Chr12 | 15589990 | T-A | HET | ||
| SBS | Chr12 | 8116756 | C-T | Homo | ||
| SBS | Chr2 | 14304632 | G-A | Homo | ||
| SBS | Chr2 | 15275278 | C-A | Homo | ||
| SBS | Chr2 | 9545138 | A-G | Homo | ||
| SBS | Chr3 | 24402440 | G-T | HET | ||
| SBS | Chr4 | 4960624 | C-T | HET | ||
| SBS | Chr5 | 17201 | G-C | HET | ||
| SBS | Chr5 | 24976353 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g43000 |
| SBS | Chr6 | 13477882 | T-C | HET | ||
| SBS | Chr6 | 26958229 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g44660 |
| SBS | Chr6 | 29432490 | C-T | HET | ||
| SBS | Chr6 | 29432491 | G-T | HET | ||
| SBS | Chr6 | 3020542 | A-G | HET | ||
| SBS | Chr6 | 5913473 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g11280 |
| SBS | Chr8 | 24721786 | G-C | HET | ||
| SBS | Chr9 | 13367749 | A-T | HET | ||
| SBS | Chr9 | 8817897 | G-A | HET |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 4323587 | 4323592 | 5 | |
| Deletion | Chr4 | 6285158 | 6285166 | 8 | LOC_Os04g11490 |
| Deletion | Chr6 | 6641581 | 6641582 | 1 | |
| Deletion | Chr5 | 13952001 | 13968000 | 15999 | 2 |
| Deletion | Chr3 | 14470844 | 14470845 | 1 | LOC_Os03g25330 |
| Deletion | Chr5 | 14665493 | 14665508 | 15 | |
| Deletion | Chr9 | 15887476 | 15887481 | 5 | |
| Deletion | Chr8 | 17058106 | 17058156 | 50 | |
| Deletion | Chr5 | 20541694 | 20541695 | 1 | |
| Deletion | Chr7 | 22023971 | 22023977 | 6 | |
| Deletion | Chr5 | 27526321 | 27526329 | 8 | |
| Deletion | Chr6 | 27925768 | 27925776 | 8 | LOC_Os06g46060 |
| Deletion | Chr6 | 30254406 | 30254421 | 15 | LOC_Os06g49960 |
Insertions: 5
No Inversion
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 722423 | Chr1 | 19462834 | |
| Translocation | Chr9 | 1612421 | Chr5 | 15682841 | 2 |
| Translocation | Chr6 | 6857164 | Chr5 | 27483957 | |
| Translocation | Chr8 | 7210005 | Chr4 | 6467110 | |
| Translocation | Chr6 | 17871915 | Chr2 | 11966174 | 2 |
| Translocation | Chr11 | 24207834 | Chr10 | 11150143 | |
| Translocation | Chr7 | 26057655 | Chr1 | 10500976 | |
| Translocation | Chr11 | 28255711 | Chr9 | 408063 |