Search Results
| Mutant Information |
|---|
| Mutant Name | FN4052-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4052-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19919744 | A-G | Homo | ||
| SBS | Chr1 | 22153476 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g39360 |
| SBS | Chr1 | 23469717 | G-A | HET | ||
| SBS | Chr1 | 26780420 | C-T | HET | ||
| SBS | Chr1 | 31702713 | G-A | HET | ||
| SBS | Chr1 | 36799627 | A-T | HET | ||
| SBS | Chr2 | 10487272 | T-C | Homo | ||
| SBS | Chr3 | 2021553 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g04400 |
| SBS | Chr3 | 12705674 | C-T | Homo | ||
| SBS | Chr3 | 17926691 | T-A | HET | ||
| SBS | Chr4 | 22823605 | A-G | Homo | ||
| SBS | Chr5 | 2804230 | T-A | HET | ||
| SBS | Chr5 | 2931766 | G-T | HET | ||
| SBS | Chr5 | 23094204 | T-C | Homo | ||
| SBS | Chr5 | 25658014 | A-T | HET | ||
| SBS | Chr5 | 28968045 | A-G | Homo | ||
| SBS | Chr7 | 6141103 | C-T | HET | ||
| SBS | Chr7 | 9115803 | A-G | HET | ||
| SBS | Chr7 | 20028887 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g33510 |
| SBS | Chr7 | 22569347 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g37640 |
| SBS | Chr7 | 22569348 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g37640 |
| SBS | Chr8 | 21921465 | T-A | HET | ||
| SBS | Chr9 | 12574682 | G-A | HET | ||
| SBS | Chr10 | 14358453 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g27230 |
| SBS | Chr10 | 23012732 | T-A | Homo | ||
| SBS | Chr11 | 2559999 | A-G | HET | ||
| SBS | Chr11 | 4865078 | C-T | HET | ||
| SBS | Chr11 | 20351763 | C-T | HET | ||
| SBS | Chr12 | 4989600 | G-C | HET | ||
| SBS | Chr12 | 14817167 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g25600 |
| SBS | Chr12 | 21923729 | C-A | HET | ||
| SBS | Chr12 | 22041534 | T-C | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 865400 | 865402 | 2 | |
| Deletion | Chr11 | 3047851 | 3047852 | 1 | |
| Deletion | Chr4 | 9737248 | 9737269 | 21 | LOC_Os04g17770 |
| Deletion | Chr7 | 10071021 | 10071030 | 9 | LOC_Os07g17140 |
| Deletion | Chr5 | 12421333 | 12421358 | 25 | LOC_Os05g21120 |
| Deletion | Chr3 | 15128737 | 15128738 | 1 | |
| Deletion | Chr5 | 15794804 | 15794816 | 12 | |
| Deletion | Chr10 | 17435397 | 17435401 | 4 | |
| Deletion | Chr4 | 18917978 | 18917979 | 1 | |
| Deletion | Chr3 | 19726338 | 19726339 | 1 | |
| Deletion | Chr2 | 20697209 | 20697211 | 2 | |
| Deletion | Chr11 | 21551033 | 21551035 | 2 | |
| Deletion | Chr12 | 22430001 | 22480000 | 49999 | 5 |
| Deletion | Chr12 | 23170784 | 23170786 | 2 | |
| Deletion | Chr3 | 23772274 | 23772275 | 1 | |
| Deletion | Chr4 | 25940421 | 25940430 | 9 | |
| Deletion | Chr2 | 34346630 | 34346648 | 18 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 7392369 | 7392370 | 2 | |
| Insertion | Chr8 | 12331778 | 12331781 | 4 | |
| Insertion | Chr4 | 27471956 | 27472016 | 61 |
Inversions: 5
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 9525031 | Chr6 | 20498085 | 2 |
| Translocation | Chr12 | 13545259 | Chr4 | 6233521 | LOC_Os04g11410 |
| Translocation | Chr6 | 20126133 | Chr4 | 27824676 | LOC_Os04g46930 |
| Translocation | Chr6 | 20715016 | Chr4 | 27824560 | LOC_Os04g46930 |
| Translocation | Chr7 | 24843741 | Chr6 | 29094877 | |
| Translocation | Chr12 | 25245280 | Chr1 | 20789581 | LOC_Os12g40780 |
| Translocation | Chr12 | 25245281 | Chr1 | 20788448 | LOC_Os12g40780 |