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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19839006	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35820
SBS	Chr1	21648612	C-T	HET	STOP_GAINED	LOC_Os01g38540
SBS	Chr1	32402583	G-T	Homo
SBS	Chr10	1272713	A-G	HET
SBS	Chr10	1360102	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g03230
SBS	Chr10	7754218	G-A	Homo
SBS	Chr11	26315902	G-A	Homo
SBS	Chr11	778173	C-T	Homo
SBS	Chr12	1446898	C-T	HET
SBS	Chr12	20380033	C-T	HET
SBS	Chr2	34674640	C-T	HET
SBS	Chr2	9782255	A-G	HET
SBS	Chr2	9844528	A-G	HET
SBS	Chr3	151486	G-C	Homo
SBS	Chr3	16852288	G-A	HET
SBS	Chr3	25309571	A-G	HET
SBS	Chr3	30215260	T-C	Homo
SBS	Chr3	31569240	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g55490
SBS	Chr4	25115888	C-T	Homo
SBS	Chr4	31748241	T-A	Homo
SBS	Chr4	6236810	G-A	Homo
SBS	Chr5	12122345	C-T	HET
SBS	Chr5	26766880	C-T	Homo
SBS	Chr6	1814137	T-A	HET
SBS	Chr6	23688525	A-T	Homo
SBS	Chr6	29752834	G-T	HET
SBS	Chr6	3548386	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g07380
SBS	Chr7	11598160	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g19570
SBS	Chr7	24641655	A-T	HET
SBS	Chr7	5588797	T-C	HET
SBS	Chr8	23709314	C-A	HET
SBS	Chr8	24575733	G-A	HET
SBS	Chr9	11453521	C-A	HET
SBS	Chr9	18157365	C-T	HET
SBS	Chr9	4076991	G-A	HET
SBS	Chr9	5709653	G-C	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1823603	1823612	9
Deletion	Chr6	3418190	3418197	7	LOC_Os06g07130
Deletion	Chr8	3655269	3655272	3
Deletion	Chr7	5588772	5588775	3
Deletion	Chr1	6555081	6555082	1
Deletion	Chr8	8190418	8190419	1
Deletion	Chr7	11399654	11399830	176	LOC_Os07g19250
Deletion	Chr2	11431512	11431955	443
Deletion	Chr1	12228001	12253000	24999	5
Deletion	Chr1	12256001	12313000	56999	9
Deletion	Chr1	13873512	13873513	1	LOC_Os01g24630
Deletion	Chr5	16522191	16522193	2
Deletion	Chr12	20407100	20407104	4
Deletion	Chr4	20520217	20520224	7	LOC_Os04g33870
Deletion	Chr5	28231351	28231374	23
Deletion	Chr2	30565783	30565784	1
Deletion	Chr4	35005837	35005868	31

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	32866274	32866275	2
Insertion	Chr3	29061505	29061506	2
Insertion	Chr4	2364347	2364397	51
Insertion	Chr5	15012379	15012466	88
Insertion	Chr6	12368271	12368272	2
Insertion	Chr9	13367940	13367941	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	442157	867883	2

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2047788	Chr4	4120156	2
Translocation	Chr6	3723267	Chr1	12227517
Translocation	Chr6	3723283	Chr1	12226802
Translocation	Chr5	4636422	Chr1	40906731	LOC_Os01g70660
Translocation	Chr7	5265584	Chr4	13188931	2
Translocation	Chr5	5504345	Chr2	17672636	2
Translocation	Chr9	6204615	Chr1	23581018
Translocation	Chr9	9765905	Chr2	6850978
Translocation	Chr8	13663382	Chr5	22889167
Translocation	Chr11	16695588	Chr6	25380995	LOC_Os06g42260
Translocation	Chr12	16719724	Chr6	13458630
Translocation	Chr8	25425642	Chr2	16057044
Translocation	Chr8	27043488	Chr7	18570564

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