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| Mutant Information |
|---|
| Mutant Name | FN4064-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4064-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13107673 | G-A | Homo | ||
| SBS | Chr1 | 2665738 | C-A | Homo | ||
| SBS | Chr1 | 29332121 | T-C | HET | ||
| SBS | Chr1 | 37936105 | C-T | Homo | ||
| SBS | Chr11 | 15069529 | A-G | HET | ||
| SBS | Chr11 | 15180057 | G-A | HET | ||
| SBS | Chr12 | 12976204 | T-C | HET | ||
| SBS | Chr12 | 22246380 | G-A | Homo | ||
| SBS | Chr12 | 26541944 | G-A | HET | ||
| SBS | Chr2 | 18355969 | C-A | HET | ||
| SBS | Chr3 | 36288716 | A-G | Homo | ||
| SBS | Chr4 | 10604688 | T-A | HET | ||
| SBS | Chr5 | 19177565 | C-T | Homo | ||
| SBS | Chr5 | 19177566 | T-C | Homo | ||
| SBS | Chr5 | 24826947 | C-G | HET | ||
| SBS | Chr5 | 25342216 | G-T | HET | ||
| SBS | Chr5 | 8800292 | G-T | HET | ||
| SBS | Chr6 | 14298253 | T-A | Homo | ||
| SBS | Chr6 | 14298254 | T-A | Homo | ||
| SBS | Chr6 | 15143487 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g25890 |
| SBS | Chr6 | 2421030 | C-T | Homo | ||
| SBS | Chr6 | 25501439 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g42430 |
| SBS | Chr6 | 930472 | T-C | Homo | ||
| SBS | Chr7 | 2345676 | C-T | HET | ||
| SBS | Chr7 | 2345678 | G-A | HET | ||
| SBS | Chr8 | 10343396 | C-A | Homo | ||
| SBS | Chr9 | 11227918 | G-A | HET | ||
| SBS | Chr9 | 15565916 | G-A | HET | ||
| SBS | Chr9 | 16853116 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g27690 |
| SBS | Chr9 | 9213805 | A-G | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 144729 | 144757 | 28 | |
| Deletion | Chr7 | 2754001 | 2786000 | 31999 | 6 |
| Deletion | Chr6 | 2835025 | 2835028 | 3 | |
| Deletion | Chr4 | 5666001 | 5708000 | 41999 | 8 |
| Deletion | Chr8 | 10770775 | 10770776 | 1 | |
| Deletion | Chr6 | 13914383 | 13914386 | 3 | |
| Deletion | Chr11 | 25330399 | 25330400 | 1 | |
| Deletion | Chr1 | 35316470 | 35316483 | 13 | LOC_Os01g61030 |
| Deletion | Chr3 | 36294577 | 36294579 | 2 | LOC_Os03g64230 |
| Deletion | Chr1 | 40158051 | 40158079 | 28 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 21936603 | 21936603 | 1 | LOC_Os10g40804 |
| Insertion | Chr11 | 18500180 | 18500181 | 2 | |
| Insertion | Chr6 | 5426522 | 5426523 | 2 | |
| Insertion | Chr7 | 4335170 | 4335286 | 117 | |
| Insertion | Chr9 | 14334102 | 14334102 | 1 |
No Inversion
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 3358046 | Chr5 | 27982347 | 2 |
| Translocation | Chr7 | 3358051 | Chr5 | 27983130 | 2 |
| Translocation | Chr7 | 10182950 | Chr4 | 7199550 | 2 |
| Translocation | Chr12 | 13923206 | Chr2 | 19373260 | |
| Translocation | Chr11 | 14753919 | Chr6 | 9352429 | |
| Translocation | Chr6 | 18247541 | Chr4 | 25155880 | LOC_Os06g31350 |
| Translocation | Chr8 | 20134676 | Chr1 | 2999922 | LOC_Os01g06310 |
| Translocation | Chr11 | 21092115 | Chr4 | 779244 | LOC_Os04g02250 |
| Translocation | Chr6 | 22695182 | Chr4 | 27385343 | |
| Translocation | Chr3 | 23350219 | Chr2 | 25750918 | |
| Translocation | Chr12 | 26916574 | Chr2 | 17337442 | LOC_Os12g43430 |