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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr12	7387756	G-A	HET
SBS	Chr2	12275814	G-A	Homo
SBS	Chr2	19776627	C-A	HET	STOP_GAINED	LOC_Os02g33280
SBS	Chr2	22117888	G-A	HET
SBS	Chr2	8753630	G-A	Homo
SBS	Chr2	8753631	T-A	Homo
SBS	Chr3	19065652	A-C	HET
SBS	Chr3	29910480	C-T	HET
SBS	Chr3	7446813	T-C	HET
SBS	Chr4	10270970	G-T	HET
SBS	Chr4	2342348	C-T	HET
SBS	Chr4	28991770	G-A	HET
SBS	Chr4	8316290	C-A	HET
SBS	Chr5	17258016	G-A	Homo
SBS	Chr5	816222	A-T	HET
SBS	Chr6	21138031	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g36110
SBS	Chr7	10955510	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18510
SBS	Chr9	20144432	T-C	HET
SBS	Chr9	21021819	C-T	HET
SBS	Chr9	21792627	G-T	HET
SBS	Chr9	21792628	T-A	HET
SBS	Chr9	8783280	G-A	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2803231	2803234	3
Deletion	Chr4	3093663	3093665	2
Deletion	Chr1	9399001	9460000	60999	12
Deletion	Chr6	9410538	9410550	12
Deletion	Chr4	11145276	11145279	3	LOC_Os04g19990
Deletion	Chr4	19073637	19073877	240	LOC_Os04g31860
Deletion	Chr8	21379755	21379759	4
Deletion	Chr3	22297431	22297441	10
Deletion	Chr3	23366409	23366412	3
Deletion	Chr3	24783471	24783472	1
Deletion	Chr5	25623355	25623356	1
Deletion	Chr12	26316418	26316420	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	22622503	22622512	10

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2469392	Chr4	679681	LOC_Os04g02100
Translocation	Chr10	6582745	Chr9	8286448	LOC_Os10g11870
Translocation	Chr7	9604616	Chr3	25732270
Translocation	Chr3	36405569	Chr1	9900116	LOC_Os01g17214
Translocation	Chr3	36405787	Chr1	9900116	LOC_Os01g17214

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