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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17918585	A-T	HET
SBS	Chr1	18064935	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g32900
SBS	Chr1	20963437	A-G	HET
SBS	Chr2	16876343	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g28520
SBS	Chr2	27580796	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g45370
SBS	Chr2	30955484	C-T	HET
SBS	Chr3	2100815	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04500
SBS	Chr4	27278	G-T	HET
SBS	Chr4	5843932	C-T	HET
SBS	Chr4	20162424	C-T	Homo
SBS	Chr4	20833351	C-T	HET
SBS	Chr4	25057928	A-C	HET
SBS	Chr4	31116653	A-T	HET
SBS	Chr5	19871455	T-G	Homo
SBS	Chr5	23161901	C-T	Homo
SBS	Chr6	4106252	C-A	Homo
SBS	Chr6	6959951	C-T	HET
SBS	Chr6	19675269	G-A	HET
SBS	Chr6	21084282	C-A	HET
SBS	Chr6	26002695	A-T	HET
SBS	Chr8	7244689	C-A	HET
SBS	Chr8	8032931	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13500
SBS	Chr8	9191549	C-T	HET
SBS	Chr8	10553438	G-A	HET
SBS	Chr8	18808807	C-T	HET
SBS	Chr9	5290278	C-T	HET
SBS	Chr9	13898603	A-G	HET
SBS	Chr10	6619375	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g11930
SBS	Chr10	7955911	C-T	Homo
SBS	Chr10	12603640	A-T	Homo
SBS	Chr11	778173	C-T	Homo
SBS	Chr11	19210671	G-A	HET
SBS	Chr11	24812285	A-G	HET
SBS	Chr12	9045031	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g15870

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	758032	758037	5
Deletion	Chr12	1294888	1294895	7
Deletion	Chr2	1462729	1462737	8
Deletion	Chr10	2124699	2124702	3
Deletion	Chr2	2403865	2403867	2	LOC_Os02g05040
Deletion	Chr1	4626088	4626103	15
Deletion	Chr8	4735977	4735990	13
Deletion	Chr5	5015202	5015207	5	LOC_Os05g09040
Deletion	Chr5	7358001	7479000	120999	19
Deletion	Chr12	8165063	8165064	1
Deletion	Chr8	10717859	10717864	5
Deletion	Chr8	10909769	10909781	12
Deletion	Chr3	11722136	11722142	6
Deletion	Chr2	11816083	11816092	9
Deletion	Chr9	13224887	13224894	7	LOC_Os09g21820
Deletion	Chr11	13271478	13271485	7
Deletion	Chr8	14383424	14383429	5
Deletion	Chr6	14820803	14820808	5
Deletion	Chr6	16885048	16885051	3
Deletion	Chr1	17091363	17091373	10
Deletion	Chr9	17790523	17790528	5
Deletion	Chr2	18600326	18600336	10
Deletion	Chr9	19851847	19851848	1
Deletion	Chr4	20530504	20530506	2
Deletion	Chr9	21478779	21478781	2
Deletion	Chr11	22245647	22245652	5
Deletion	Chr6	25046552	25046554	2
Deletion	Chr12	27294256	27294267	11	LOC_Os12g43990
Deletion	Chr1	30490450	30490480	30

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	24005028	24005029	2
Insertion	Chr12	1616132	1616135	4
Insertion	Chr4	26123825	26123838	14
Insertion	Chr11	25113040	25113735	696

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2155873	2526057
Inversion	Chr7	2155878	2526048
Inversion	Chr3	26045151	26045466
Inversion	Chr11	28246283	28434566	LOC_Os11g47290

No Translocation

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