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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	453587	T-G	HET	INTERGENIC
SBS	Chr1	5296555	G-A	HET	INTERGENIC
SBS	Chr1	21405761	T-C	HET	INTERGENIC
SBS	Chr2	31356494	C-T	HET	INTERGENIC
SBS	Chr2	34482657	A-G	HET	SPLICE_SITE_ACCEPTOR	LOC_Os02g56320
SBS	Chr3	1744911	A-T	HOMO	INTERGENIC
SBS	Chr4	11134181	C-T	HET	INTERGENIC
SBS	Chr4	18067935	G-A	HET	INTERGENIC
SBS	Chr5	3800686	G-T	HOMO	INTRON
SBS	Chr5	10359242	A-G	HOMO	INTERGENIC
SBS	Chr5	20499584	T-C	HET	SYNONYMOUS_CODING
SBS	Chr6	7373061	G-A	HET	INTERGENIC
SBS	Chr6	11350818	C-T	HET	INTERGENIC
SBS	Chr6	13134429	G-A	HET	INTERGENIC
SBS	Chr6	16746941	C-T	HET	STOP_GAINED	LOC_Os06g29320
SBS	Chr6	22657434	G-A	HET	INTRON
SBS	Chr6	24606904	T-A	HET	INTERGENIC
SBS	Chr7	8431412	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14760
SBS	Chr7	17451539	T-A	HET	INTERGENIC
SBS	Chr8	213248	C-T	HET	INTERGENIC
SBS	Chr8	13502960	A-G	HET	INTERGENIC
SBS	Chr9	6478749	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	3991430	A-C	HET	INTERGENIC
SBS	Chr11	6022025	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	22469482	A-T	HET	INTRON
SBS	Chr11	23100874	G-A	HET	INTERGENIC
SBS	Chr12	14923370	A-T	HET	INTERGENIC
SBS	Chr12	15217496	C-G	HET	INTERGENIC
SBS	Chr12	26433231	A-T	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	202999	203015	16
Deletion	Chr5	1583722	1583732	10	LOC_Os05g03660
Deletion	Chr10	2764001	2950000	186000	24
Deletion	Chr10	2960001	3205000	245000	34
Deletion	Chr10	3215001	3894000	679000	97
Deletion	Chr8	3432821	3432827	6
Deletion	Chr7	4008228	4008236	8
Deletion	Chr9	4058019	4058028	9
Deletion	Chr5	6817015	6817016	1
Deletion	Chr2	7310778	7310779	1	LOC_Os02g13620
Deletion	Chr3	7485016	7485020	4	LOC_Os03g13820
Deletion	Chr8	7893957	7893959	2	LOC_Os08g13270
Deletion	Chr11	11342975	11342985	10
Deletion	Chr12	11375609	11375615	6	LOC_Os12g19549
Deletion	Chr4	11885617	11886310	693	LOC_Os04g21110
Deletion	Chr11	13804274	13804278	4
Deletion	Chr12	14919309	14919316	7
Deletion	Chr2	15233063	15233067	4
Deletion	Chr10	18048131	18114479	66348	5
Deletion	Chr9	18672848	18672861	13	LOC_Os09g31040
Deletion	Chr9	18813869	18813883	14
Deletion	Chr4	18836320	18836336	16	LOC_Os04g31500
Deletion	Chr2	35807537	35807550	13	LOC_Os02g58580
Deletion	Chr1	35810870	35810873	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	29836121	29836122	2
Insertion	Chr9	18835126	18835127	2
Insertion	Chr2	16607553	16607554	2
Insertion	Chr12	12704240	12704240	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	28264171	29808659	LOC_Os04g47620

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1985847	Chr5	20297792	LOC_Os11g04650
Translocation	Chr11	3061057	Chr5	20297756
Translocation	Chr12	6160265	Chr7	13180499

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