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Mutant Information |
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Mutant Name | FN4070-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4070-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 29
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 16442328 | C-T | Homo | ||
SBS | Chr1 | 21596421 | G-A | HET | ||
SBS | Chr1 | 28202832 | G-A | HET | ||
SBS | Chr10 | 13957069 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g26730 |
SBS | Chr10 | 14744501 | G-T | Homo | ||
SBS | Chr10 | 20642461 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g38750 |
SBS | Chr10 | 20982976 | G-C | HET | ||
SBS | Chr10 | 22659159 | C-T | HET | ||
SBS | Chr11 | 19537074 | A-T | Homo | ||
SBS | Chr11 | 23207890 | C-T | HET | ||
SBS | Chr11 | 8690729 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g15350 |
SBS | Chr12 | 26975911 | C-T | Homo | ||
SBS | Chr12 | 26975912 | T-C | Homo | ||
SBS | Chr2 | 19616304 | A-G | HET | ||
SBS | Chr2 | 23619290 | G-A | HET | ||
SBS | Chr2 | 33825071 | T-A | Homo | ||
SBS | Chr2 | 4286588 | G-A | Homo | ||
SBS | Chr2 | 6211273 | G-T | Homo | STOP_GAINED | LOC_Os02g11980 |
SBS | Chr3 | 30730031 | T-A | HET | ||
SBS | Chr5 | 12744359 | A-G | Homo | ||
SBS | Chr5 | 22870434 | A-T | Homo | ||
SBS | Chr6 | 29400240 | C-T | Homo | ||
SBS | Chr7 | 22010521 | C-A | HET | ||
SBS | Chr7 | 8723006 | C-G | HET | ||
SBS | Chr7 | 8723007 | A-G | HET | ||
SBS | Chr8 | 17577783 | C-T | HET | ||
SBS | Chr8 | 18444722 | G-C | HET | ||
SBS | Chr8 | 22697457 | C-A | HET | ||
SBS | Chr9 | 21874828 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g37930 |
Deletions: 32
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 969244 | 969253 | 9 | |
Deletion | Chr11 | 3200844 | 3200870 | 26 | |
Deletion | Chr9 | 6783068 | 6783073 | 5 | |
Deletion | Chr3 | 7899873 | 7899874 | 1 | |
Deletion | Chr7 | 9062001 | 9255000 | 192999 | 30 |
Deletion | Chr12 | 9675902 | 9675912 | 10 | |
Deletion | Chr10 | 9756984 | 9756985 | 1 | |
Deletion | Chr3 | 10763510 | 10763519 | 9 | |
Deletion | Chr9 | 10826874 | 10826878 | 4 | |
Deletion | Chr3 | 11585153 | 11585159 | 6 | |
Deletion | Chr3 | 11679791 | 11679792 | 1 | |
Deletion | Chr10 | 11838454 | 11838455 | 1 | |
Deletion | Chr6 | 13967662 | 13967676 | 14 | |
Deletion | Chr3 | 15442470 | 15442474 | 4 | |
Deletion | Chr10 | 15524602 | 15524611 | 9 | LOC_Os10g29880 |
Deletion | Chr10 | 18139214 | 18139215 | 1 | |
Deletion | Chr10 | 18752941 | 18752950 | 9 | LOC_Os10g35140 |
Deletion | Chr1 | 22360036 | 22360063 | 27 | |
Deletion | Chr9 | 22371503 | 22371515 | 12 | |
Deletion | Chr5 | 22432798 | 22432806 | 8 | LOC_Os05g38260 |
Deletion | Chr1 | 26101530 | 26101567 | 37 | |
Deletion | Chr6 | 26170481 | 26170491 | 10 | |
Deletion | Chr11 | 27395476 | 27395488 | 12 | |
Deletion | Chr11 | 27453592 | 27453602 | 10 | |
Deletion | Chr7 | 28039745 | 28039750 | 5 | |
Deletion | Chr2 | 31809847 | 31809852 | 5 | |
Deletion | Chr1 | 33896291 | 33896292 | 1 | |
Deletion | Chr3 | 34436817 | 34436839 | 22 | |
Deletion | Chr4 | 34580317 | 34580330 | 13 | |
Deletion | Chr4 | 35276698 | 35276709 | 11 | |
Deletion | Chr1 | 37948521 | 37948522 | 1 | |
Deletion | Chr1 | 40107058 | 40107060 | 2 |
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 13047746 | 13047746 | 1 | |
Insertion | Chr12 | 3587414 | 3587414 | 1 | |
Insertion | Chr2 | 9396604 | 9396604 | 1 | |
Insertion | Chr4 | 14041242 | 14041245 | 4 | |
Insertion | Chr5 | 15980109 | 15980109 | 1 | LOC_Os05g27480![]() |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 11787329 | 11792105 | LOC_Os09g19700 |
Inversion | Chr9 | 11787339 | 11792109 | LOC_Os09g19700 |
Inversion | Chr1 | 22052340 | 22358305 | LOC_Os01g39630 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 11989366 | Chr4 | 22628993 | 2 |
Translocation | Chr8 | 11990074 | Chr4 | 34962340 | LOC_Os04g58780 |
Translocation | Chr2 | 16659498 | Chr1 | 23143179 | |
Translocation | Chr4 | 30670300 | Chr1 | 4858481 | 2 |