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Mutant Information

Mutant NameFN4070-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN4070-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 29
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr116442328C-THomo
SBSChr121596421G-AHET
SBSChr128202832G-AHET
SBSChr1013957069G-AHETNON_SYNONYMOUS_CODINGLOC_Os10g26730
SBSChr1014744501G-THomo
SBSChr1020642461G-THETNON_SYNONYMOUS_CODINGLOC_Os10g38750
SBSChr1020982976G-CHET
SBSChr1022659159C-THET
SBSChr1119537074A-THomo
SBSChr1123207890C-THET
SBSChr118690729C-AHomoNON_SYNONYMOUS_CODINGLOC_Os11g15350
SBSChr1226975911C-THomo
SBSChr1226975912T-CHomo
SBSChr219616304A-GHET
SBSChr223619290G-AHET
SBSChr233825071T-AHomo
SBSChr24286588G-AHomo
SBSChr26211273G-THomoSTOP_GAINEDLOC_Os02g11980
SBSChr330730031T-AHET
SBSChr512744359A-GHomo
SBSChr522870434A-THomo
SBSChr629400240C-THomo
SBSChr722010521C-AHET
SBSChr78723006C-GHET
SBSChr78723007A-GHET
SBSChr817577783C-THET
SBSChr818444722G-CHET
SBSChr822697457C-AHET
SBSChr921874828A-GHETNON_SYNONYMOUS_CODINGLOC_Os09g37930

Deletions: 32
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr69692449692539
DeletionChr113200844320087026
DeletionChr9678306867830735
DeletionChr3789987378998741
DeletionChr79062001925500019299930
DeletionChr129675902967591210
DeletionChr10975698497569851
DeletionChr310763510107635199
DeletionChr910826874108268784
DeletionChr311585153115851596
DeletionChr311679791116797921
DeletionChr1011838454118384551
DeletionChr6139676621396767614
DeletionChr315442470154424744
DeletionChr1015524602155246119LOC_Os10g29880
DeletionChr1018139214181392151
DeletionChr1018752941187529509LOC_Os10g35140
DeletionChr1223600362236006327
DeletionChr9223715032237151512
DeletionChr522432798224328068LOC_Os05g38260
DeletionChr1261015302610156737
DeletionChr6261704812617049110
DeletionChr11273954762739548812
DeletionChr11274535922745360210
DeletionChr728039745280397505
DeletionChr231809847318098525
DeletionChr133896291338962921
DeletionChr3344368173443683922
DeletionChr4345803173458033013
DeletionChr4352766983527670911
DeletionChr137948521379485221
DeletionChr140107058401070602

Insertions: 5
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1213047746130477461
InsertionChr12358741435874141
InsertionChr2939660493966041
InsertionChr414041242140412454
InsertionChr515980109159801091LOC_Os05g27480image

Inversions: 3
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr91178732911792105LOC_Os09g19700
InversionChr91178733911792109LOC_Os09g19700
InversionChr12205234022358305LOC_Os01g39630

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr811989366Chr4226289932
TranslocationChr811990074Chr434962340LOC_Os04g58780
TranslocationChr216659498Chr123143179
TranslocationChr430670300Chr148584812