Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN4072-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4072-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12064157 | T-A | HET | ||
| SBS | Chr1 | 14809415 | G-A | Homo | ||
| SBS | Chr1 | 40990797 | C-T | HET | ||
| SBS | Chr1 | 6737154 | C-T | HET | ||
| SBS | Chr10 | 13043225 | C-A | Homo | ||
| SBS | Chr10 | 18124939 | C-T | Homo | ||
| SBS | Chr11 | 8977763 | T-A | Homo | ||
| SBS | Chr11 | 8979581 | C-T | Homo | ||
| SBS | Chr12 | 27455186 | G-T | HET | ||
| SBS | Chr12 | 27455187 | A-T | HET | ||
| SBS | Chr12 | 3641647 | C-A | HET | ||
| SBS | Chr2 | 31154352 | T-A | HET | ||
| SBS | Chr2 | 32003629 | A-G | HET | ||
| SBS | Chr3 | 28146892 | G-A | Homo | ||
| SBS | Chr3 | 33266041 | A-G | HET | ||
| SBS | Chr3 | 6469574 | G-A | Homo | ||
| SBS | Chr4 | 1532155 | T-G | HET | ||
| SBS | Chr4 | 1532156 | A-T | HET | ||
| SBS | Chr4 | 2308388 | G-A | HET | ||
| SBS | Chr4 | 2308389 | G-A | HET | ||
| SBS | Chr4 | 27899377 | G-A | HET | ||
| SBS | Chr5 | 14101395 | C-A | HET | ||
| SBS | Chr5 | 15172291 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g26090 |
| SBS | Chr5 | 15783074 | A-G | HET | ||
| SBS | Chr5 | 27200736 | T-C | Homo | ||
| SBS | Chr5 | 27234728 | A-C | Homo | ||
| SBS | Chr5 | 5497789 | G-A | HET | ||
| SBS | Chr5 | 5497790 | G-A | HET | ||
| SBS | Chr5 | 5497791 | G-A | HET | ||
| SBS | Chr6 | 14631905 | C-T | Homo | ||
| SBS | Chr6 | 14872942 | G-A | Homo | ||
| SBS | Chr6 | 21663279 | G-T | Homo | ||
| SBS | Chr6 | 21663280 | A-G | Homo | ||
| SBS | Chr6 | 29833609 | A-G | HET | ||
| SBS | Chr6 | 4655930 | G-A | HET | ||
| SBS | Chr7 | 27369093 | A-G | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 8977788 | 8977789 | 1 | |
| Deletion | Chr8 | 12524671 | 12524672 | 1 | |
| Deletion | Chr11 | 14511562 | 14511564 | 2 | |
| Deletion | Chr6 | 15622426 | 15622427 | 1 | LOC_Os06g27610 |
| Deletion | Chr2 | 20520114 | 20520117 | 3 | LOC_Os02g34300 |
| Deletion | Chr1 | 21921223 | 21921224 | 1 | LOC_Os01g38990 |
| Deletion | Chr2 | 26502582 | 26502587 | 5 | |
| Deletion | Chr1 | 27428083 | 27428084 | 1 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 31383990 | 31384104 | 115 | |
| Insertion | Chr3 | 184498 | 184501 | 4 | |
| Insertion | Chr3 | 22654384 | 22654386 | 3 | |
| Insertion | Chr4 | 8684439 | 8684439 | 1 | |
| Insertion | Chr7 | 27604320 | 27604322 | 3 | LOC_Os07g46260 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 21301248 | 21321277 | LOC_Os11g36200 |
| Inversion | Chr11 | 21301261 | 21321306 | LOC_Os11g36200 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 986736 | Chr1 | 27575573 | |
| Translocation | Chr10 | 987209 | Chr1 | 27575635 | |
| Translocation | Chr9 | 10370589 | Chr4 | 14572701 | |
| Translocation | Chr6 | 16151231 | Chr2 | 10939749 | 2 |
| Translocation | Chr6 | 18190558 | Chr3 | 8985228 | |
| Translocation | Chr8 | 21861945 | Chr6 | 10139916 | |
| Translocation | Chr9 | 22299741 | Chr4 | 3249420 | |
| Translocation | Chr12 | 26995449 | Chr2 | 10940031 | LOC_Os02g18770 |