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Mutant Information

Mutant Name	FN4073-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4073-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15242645	G-C	HET
SBS	Chr10	19991571	G-A	HET
SBS	Chr11	10194044	A-T	Homo
SBS	Chr11	27398912	A-T	HET
SBS	Chr12	3726785	T-A	HET
SBS	Chr3	22946143	G-A	Homo
SBS	Chr5	12583202	C-A	HET
SBS	Chr6	13495928	G-T	Homo
SBS	Chr6	13502051	A-C	Homo
SBS	Chr6	13508599	C-G	Homo
SBS	Chr6	25936719	C-A	HET
SBS	Chr7	16721939	G-A	HET
SBS	Chr7	17752117	C-A	HET
SBS	Chr7	5315351	C-A	HET
SBS	Chr7	8113369	C-T	HET
SBS	Chr8	11329074	G-A	Homo
SBS	Chr8	26522333	G-T	Homo
SBS	Chr8	6994188	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11930
SBS	Chr9	11609383	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19390

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1001711	1001714	3
Deletion	Chr3	1423304	1423311	7
Deletion	Chr5	3112940	3112941	1
Deletion	Chr12	3933001	3979000	45999	9
Deletion	Chr6	8379511	8379518	7
Deletion	Chr3	8385001	8385002	1	LOC_Os03g15320
Deletion	Chr6	11065697	11065708	11
Deletion	Chr10	12184576	12184580	4
Deletion	Chr6	13508609	13508617	8
Deletion	Chr8	16314032	16314033	1
Deletion	Chr1	20931001	20966000	34999	9
Deletion	Chr1	20971001	21327000	355999	49
Deletion	Chr4	23103136	23103140	4
Deletion	Chr12	24884001	24908000	23999	5

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18484655	18484656	2
Insertion	Chr1	21094429	21094434	6
Insertion	Chr1	33510736	33510741	6
Insertion	Chr10	3149277	3149277	1
Insertion	Chr4	4373113	4373113	1
Insertion	Chr5	17463353	17463354	2
Insertion	Chr7	21737623	21737623	1

No Inversion

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	8964219	Chr2	24244989
Translocation	Chr8	9990196	Chr6	6768202	2
Translocation	Chr11	10561571	Chr10	1626223	LOC_Os10g03660
Translocation	Chr10	12127493	Chr2	16840413
Translocation	Chr7	13890993	Chr4	15170551
Translocation	Chr12	23772486	Chr9	4622876
Translocation	Chr12	24871583	Chr11	9198137	LOC_Os11g16590
Translocation	Chr11	28436438	Chr4	22510441	LOC_Os11g47290
Translocation	Chr11	28696498	Chr3	19693471	LOC_Os03g35540