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| Mutant Information |
|---|
| Mutant Name | FN4075-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4075-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 28152544 | A-T | Homo | ||
| SBS | Chr1 | 35532016 | C-T | HET | ||
| SBS | Chr10 | 15153284 | A-G | HET | ||
| SBS | Chr10 | 20980074 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g39310 |
| SBS | Chr12 | 1935340 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g04570 |
| SBS | Chr12 | 26792548 | T-C | HET | ||
| SBS | Chr2 | 20302220 | A-G | Homo | ||
| SBS | Chr3 | 11458794 | G-A | Homo | ||
| SBS | Chr4 | 14314490 | C-A | HET | ||
| SBS | Chr4 | 14314491 | T-A | HET | ||
| SBS | Chr4 | 18463353 | C-T | HET | ||
| SBS | Chr4 | 23513122 | A-T | HET | ||
| SBS | Chr4 | 34544376 | A-G | HET | ||
| SBS | Chr4 | 34544380 | C-A | HET | ||
| SBS | Chr5 | 15370221 | C-T | Homo | ||
| SBS | Chr5 | 2026715 | G-T | HET | ||
| SBS | Chr5 | 2026716 | G-T | HET | ||
| SBS | Chr5 | 29152916 | A-T | HET | ||
| SBS | Chr5 | 348345 | G-A | Homo | ||
| SBS | Chr5 | 4178739 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g07750 |
| SBS | Chr5 | 9914183 | G-A | Homo | ||
| SBS | Chr6 | 12508060 | A-T | HET | ||
| SBS | Chr6 | 15047445 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g25760 |
| SBS | Chr7 | 13629607 | C-T | HET | ||
| SBS | Chr7 | 15080699 | A-C | HET | ||
| SBS | Chr7 | 27995645 | T-A | HET | ||
| SBS | Chr7 | 5907831 | C-T | HET | ||
| SBS | Chr8 | 17554898 | A-G | Homo | ||
| SBS | Chr9 | 14693893 | A-G | Homo | ||
| SBS | Chr9 | 4373726 | A-G | HET |
Deletions: 6
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 3923863 | 3923863 | 1 | |
| Insertion | Chr11 | 27121659 | 27121782 | 124 | |
| Insertion | Chr3 | 36148604 | 36148611 | 8 | |
| Insertion | Chr4 | 9823576 | 9823576 | 1 | LOC_Os04g17880 |
| Insertion | Chr8 | 4190770 | 4190773 | 4 | |
| Insertion | Chr8 | 8547068 | 8547068 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 18857940 | 19142317 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 11900466 | Chr1 | 33586455 | |
| Translocation | Chr8 | 18421736 | Chr2 | 18426430 | LOC_Os08g29990 |
| Translocation | Chr11 | 21092115 | Chr4 | 779243 | LOC_Os04g02250 |
| Translocation | Chr7 | 22455724 | Chr5 | 7557104 | |
| Translocation | Chr9 | 22821460 | Chr8 | 10066089 |