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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25319009	C-T	HET
SBS	Chr1	41086899	G-A	Homo
SBS	Chr10	16800993	A-T	HET
SBS	Chr11	14602041	A-G	HET
SBS	Chr11	17986129	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g30910
SBS	Chr11	23432118	A-G	HET
SBS	Chr12	24067561	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g39120
SBS	Chr12	3631806	A-T	HET
SBS	Chr2	14584966	G-A	HET
SBS	Chr2	4761562	A-G	HET
SBS	Chr2	9701172	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16990
SBS	Chr3	11860141	T-C	HET
SBS	Chr3	20902410	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g37690
SBS	Chr3	25044447	G-A	HET
SBS	Chr3	27731676	A-T	Homo
SBS	Chr3	2823653	T-A	HET
SBS	Chr3	5857091	T-C	HET
SBS	Chr4	22304584	C-T	HET
SBS	Chr5	11551864	G-A	HET
SBS	Chr5	19199672	T-G	HET
SBS	Chr5	23965323	C-T	HET
SBS	Chr6	15271625	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g26100
SBS	Chr6	2276572	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g05130
SBS	Chr7	21066717	G-A	HET
SBS	Chr8	53085	C-T	HET
SBS	Chr8	53086	A-T	HET
SBS	Chr9	16643272	G-A	HET
SBS	Chr9	1843119	C-A	HET
SBS	Chr9	4571266	G-A	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	112233	112252	19	LOC_Os09g01100
Deletion	Chr5	4996001	5125000	128999	14
Deletion	Chr5	5138001	5210000	71999	14
Deletion	Chr5	5221001	5262000	40999	4
Deletion	Chr12	12046496	12046497	1
Deletion	Chr5	14093265	14093266	1	LOC_Os05g24370
Deletion	Chr5	14097629	14097630	1	LOC_Os05g24380
Deletion	Chr3	18698523	18698527	4
Deletion	Chr3	19422866	19422867	1
Deletion	Chr6	22538251	22538261	10
Deletion	Chr11	24710001	24740000	29999	6
Deletion	Chr11	24752001	25050000	297999	41
Deletion	Chr11	25075001	25272000	196999	24
Deletion	Chr11	25415001	25631000	215999	39
Deletion	Chr11	25636001	25756000	119999	18
Deletion	Chr11	25740024	25740027	3
Deletion	Chr1	27182475	27182478	3
Deletion	Chr2	29935444	29935453	9	LOC_Os02g48964
Deletion	Chr1	32016277	32016281	4

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	7427385	7427434	50
Insertion	Chr2	24759160	24759160	1
Insertion	Chr4	12983869	12983870	2
Insertion	Chr4	5982180	5982180	1
Insertion	Chr5	12758792	12758792	1
Insertion	Chr6	16242922	16242922	1
Insertion	Chr8	20892823	20892824	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	27634018	27666018
Inversion	Chr6	27634019	27665986

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3856843	Chr3	7272773	LOC_Os05g07280
Translocation	Chr5	5228851	Chr2	4062957
Translocation	Chr12	7980007	Chr6	1072418	LOC_Os12g14059
Translocation	Chr7	14744955	Chr5	3266795	LOC_Os07g25700
Translocation	Chr12	20220322	Chr4	271747
Translocation	Chr12	21931774	Chr2	2418114
Translocation	Chr12	27166586	Chr6	16774974	2
Translocation	Chr6	27666008	Chr5	3856816	LOC_Os05g07280

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