Search Results
| Mutant Information |
|---|
| Mutant Name | FN4081-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4081-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18653059 | G-A | HET | ||
| SBS | Chr1 | 30960322 | A-T | HET | ||
| SBS | Chr1 | 33068422 | G-A | HET | ||
| SBS | Chr2 | 4550979 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g08450 |
| SBS | Chr2 | 8610466 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g15400 |
| SBS | Chr3 | 12073147 | A-T | Homo | ||
| SBS | Chr4 | 3057049 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g05910 |
| SBS | Chr4 | 3450458 | A-G | Homo | ||
| SBS | Chr4 | 14663019 | C-T | HET | ||
| SBS | Chr4 | 17252347 | T-G | Homo | ||
| SBS | Chr4 | 19679414 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g32650 |
| SBS | Chr4 | 24339322 | G-T | Homo | ||
| SBS | Chr5 | 24266464 | A-G | HET | ||
| SBS | Chr6 | 23802982 | G-A | HET | ||
| SBS | Chr7 | 4962731 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g09400 |
| SBS | Chr7 | 8741618 | C-G | HET | ||
| SBS | Chr7 | 15204611 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g26440 |
| SBS | Chr7 | 16471381 | C-G | HET | ||
| SBS | Chr7 | 16471382 | C-A | HET | ||
| SBS | Chr8 | 11711090 | A-T | Homo | ||
| SBS | Chr8 | 22643306 | C-T | HET | ||
| SBS | Chr9 | 8156758 | A-G | Homo | ||
| SBS | Chr10 | 8077406 | T-C | Homo | ||
| SBS | Chr10 | 14813865 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g28470 |
| SBS | Chr11 | 20386048 | C-T | Homo | ||
| SBS | Chr12 | 1720970 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g04110 |
| SBS | Chr12 | 7167990 | T-C | Homo | ||
| SBS | Chr12 | 22711118 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g37060 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 183994 | 183998 | 4 | LOC_Os02g01340 |
| Deletion | Chr8 | 896777 | 896779 | 2 | |
| Deletion | Chr4 | 1275240 | 1275241 | 1 | |
| Deletion | Chr4 | 3568061 | 3568071 | 10 | |
| Deletion | Chr9 | 4824470 | 4824471 | 1 | LOC_Os09g09050 |
| Deletion | Chr4 | 5150100 | 5150111 | 11 | |
| Deletion | Chr10 | 7209709 | 7209769 | 60 | LOC_Os10g13350 |
| Deletion | Chr8 | 12287405 | 12287433 | 28 | |
| Deletion | Chr1 | 15873776 | 15873779 | 3 | |
| Deletion | Chr4 | 17306708 | 17306726 | 18 | LOC_Os04g29190 |
| Deletion | Chr10 | 20055792 | 20055798 | 6 | |
| Deletion | Chr1 | 20649403 | 20649406 | 3 | |
| Deletion | Chr11 | 20922229 | 20922231 | 2 | |
| Deletion | Chr2 | 21079701 | 21079702 | 1 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 23924680 | 23924683 | 4 | |
| Insertion | Chr3 | 3895807 | 3895807 | 1 | LOC_Os03g07670 |
| Insertion | Chr5 | 20345564 | 20345879 | 316 | |
| Insertion | Chr6 | 29603750 | 29603750 | 1 | |
| Insertion | Chr8 | 11160608 | 11160608 | 1 | LOC_Os08g18210 |
| Insertion | Chr11 | 15041320 | 15041320 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 870047 | 1095524 | LOC_Os04g02820 |
| Inversion | Chr4 | 870232 | 1095534 | LOC_Os04g02820 |
| Inversion | Chr1 | 11780922 | 12038950 | 2 |
| Inversion | Chr11 | 16533370 | 16831561 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 3400903 | Chr1 | 25300133 | |
| Translocation | Chr10 | 3401180 | Chr1 | 10504305 | |
| Translocation | Chr9 | 9371408 | Chr7 | 4204682 | |
| Translocation | Chr12 | 27080746 | Chr6 | 8332724 |