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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11805693	G-T	Homo
SBS	Chr1	13512383	T-C	Homo
SBS	Chr1	19428858	T-G	Homo
SBS	Chr1	28506814	C-T	Homo
SBS	Chr1	29918024	A-T	Homo
SBS	Chr1	32411948	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g56270
SBS	Chr1	37654579	A-G	Homo
SBS	Chr1	37654581	G-T	Homo
SBS	Chr1	41928929	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g72320
SBS	Chr10	12099506	G-C	HET
SBS	Chr10	4842083	G-T	HET
SBS	Chr10	7684257	T-A	HET
SBS	Chr10	8408790	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g16870
SBS	Chr11	17125452	A-G	Homo
SBS	Chr11	26174910	A-G	HET
SBS	Chr12	1250322	G-T	Homo
SBS	Chr12	8377330	C-T	HET
SBS	Chr2	11185876	A-C	HET
SBS	Chr2	11185880	T-A	HET
SBS	Chr2	2829056	C-G	HET
SBS	Chr2	32453138	C-T	HET
SBS	Chr3	1003856	A-T	HET
SBS	Chr3	16183875	T-G	HET	SPLICE_SITE_ACCEPTOR	LOC_Os03g28140
SBS	Chr3	22567943	C-A	HET
SBS	Chr4	2314970	G-T	HET
SBS	Chr4	33576028	A-G	HET
SBS	Chr5	14775792	A-C	HET
SBS	Chr5	15495404	G-A	Homo
SBS	Chr5	16323921	C-T	HET
SBS	Chr5	17905919	A-C	HET
SBS	Chr5	2450662	C-T	Homo
SBS	Chr5	26229503	T-A	HET
SBS	Chr5	27391488	T-A	HET
SBS	Chr9	20693791	G-A	HET
SBS	Chr9	9951670	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16290

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	748570	748576	6
Deletion	Chr10	1763001	1876000	112999	17
Deletion	Chr10	1886001	1923000	36999	6
Deletion	Chr7	3810113	3810114	1
Deletion	Chr7	5775812	5775813	1	LOC_Os07g10630
Deletion	Chr8	9625889	9625892	3
Deletion	Chr3	10963538	10963542	4
Deletion	Chr8	10992588	10992594	6
Deletion	Chr3	11378171	11378180	9
Deletion	Chr4	14777001	14799000	21999	3
Deletion	Chr4	15478277	15478279	2
Deletion	Chr1	16069534	16069535	1
Deletion	Chr6	19757777	19757778	1
Deletion	Chr8	20855518	20855519	1	LOC_Os08g33430
Deletion	Chr11	20868399	20868400	1
Deletion	Chr4	24622623	24622625	2
Deletion	Chr4	26995001	27004000	8999	2
Deletion	Chr1	37720064	37720071	7	LOC_Os01g64980

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	1823813	1823820	8
Insertion	Chr3	22882232	22882233	2
Insertion	Chr4	1954460	1954461	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8308450	8308771	LOC_Os04g14790
Inversion	Chr4	26989096	27006298	LOC_Os04g45630
Inversion	Chr2	32292363	32442552
Inversion	Chr2	32292373	32442562

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5309909	Chr5	12212724	2
Translocation	Chr7	22515756	Chr5	27391791	LOC_Os07g37580
Translocation	Chr7	22543171	Chr5	27391787

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