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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27808060	A-T	Homo
SBS	Chr1	31624818	T-A	Homo
SBS	Chr1	4128413	T-C	HET
SBS	Chr11	14906071	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26060
SBS	Chr11	16235171	G-T	HET
SBS	Chr11	18367004	G-T	HET
SBS	Chr11	2015258	G-A	HET
SBS	Chr11	333365	T-C	HET
SBS	Chr11	503461	G-T	HET
SBS	Chr12	15943162	T-G	Homo
SBS	Chr2	16218560	C-A	Homo
SBS	Chr2	32047420	G-A	Homo
SBS	Chr2	35316004	T-G	Homo
SBS	Chr2	7713611	A-G	Homo
SBS	Chr3	1419530	C-T	Homo
SBS	Chr3	27753048	G-A	HET
SBS	Chr3	30967585	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g54020
SBS	Chr4	14379172	C-G	Homo
SBS	Chr4	25834734	C-T	HET
SBS	Chr4	27577673	G-A	HET
SBS	Chr4	27895162	C-T	HET
SBS	Chr4	29172601	C-T	HET
SBS	Chr4	29172602	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g48910
SBS	Chr4	33558370	G-A	HET
SBS	Chr5	13584803	G-A	HET
SBS	Chr5	20977634	C-T	HET
SBS	Chr5	4416878	G-A	HET
SBS	Chr6	14083559	A-C	Homo
SBS	Chr7	13554147	A-T	HET
SBS	Chr8	4049866	G-A	Homo
SBS	Chr8	6122885	C-T	Homo
SBS	Chr9	1640082	A-G	Homo
SBS	Chr9	18515298	T-A	HET	STOP_GAINED	LOC_Os09g30412

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	114441	114453	12
Deletion	Chr5	121397	121398	1
Deletion	Chr8	405180	405181	1
Deletion	Chr6	3479001	3479020	19
Deletion	Chr3	4547718	4547724	6
Deletion	Chr6	5958031	5958035	4
Deletion	Chr12	6808693	6808709	16
Deletion	Chr6	7844383	7844387	4
Deletion	Chr3	9504915	9504918	3
Deletion	Chr9	10328479	10328484	5
Deletion	Chr11	11339577	11339583	6
Deletion	Chr2	12603899	12603903	4	LOC_Os02g21240
Deletion	Chr11	13338999	13339001	2
Deletion	Chr1	17643247	17643251	4
Deletion	Chr10	19160672	19160673	1
Deletion	Chr5	21742675	21742685	10
Deletion	Chr4	21778587	21778592	5
Deletion	Chr7	22049982	22049987	5
Deletion	Chr3	23430397	23430405	8
Deletion	Chr5	24206468	24206491	23
Deletion	Chr3	24852278	24852280	2
Deletion	Chr1	26539832	26539865	33
Deletion	Chr6	27151726	27151733	7	LOC_Os06g44910
Deletion	Chr5	28754077	28754078	1
Deletion	Chr7	29476537	29476550	13
Deletion	Chr4	31149921	31149928	7	LOC_Os04g52420
Deletion	Chr1	36215751	36215752	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25296082	25296083	2
Insertion	Chr8	17916534	17916534	1
Insertion	Chr8	4921290	4921290	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3630251	3731919	LOC_Os11g07225
Inversion	Chr11	3630262	3731927	LOC_Os11g07225
Inversion	Chr8	22564369	22811769	LOC_Os08g36170
Inversion	Chr8	22564383	22811772	LOC_Os08g36170

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	14572381	Chr2	20042242	LOC_Os02g33660
Translocation	Chr11	14572399	Chr2	20049062
Translocation	Chr8	19790196	Chr1	8346593
Translocation	Chr2	28789842	Chr1	9332331	LOC_Os02g47160

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