Search Results
| Mutant Information |
|---|
| Mutant Name | FN4088-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4088-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5438496 | G-A | HET | ||
| SBS | Chr1 | 5880666 | G-A | HET | ||
| SBS | Chr1 | 6237547 | T-C | HET | ||
| SBS | Chr2 | 7835157 | G-A | HET | ||
| SBS | Chr2 | 16814490 | C-T | Homo | ||
| SBS | Chr2 | 16814492 | C-G | Homo | ||
| SBS | Chr2 | 29848678 | G-C | HET | ||
| SBS | Chr4 | 6213866 | C-T | HET | ||
| SBS | Chr4 | 13744020 | G-A | HET | STOP_GAINED | LOC_Os04g24060 |
| SBS | Chr4 | 29288240 | A-T | Homo | ||
| SBS | Chr5 | 6310918 | G-C | Homo | ||
| SBS | Chr5 | 10179232 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g17690 |
| SBS | Chr5 | 11694600 | T-A | Homo | ||
| SBS | Chr6 | 13064621 | C-T | HET | ||
| SBS | Chr7 | 2400806 | G-A | HET | ||
| SBS | Chr7 | 6656326 | T-G | Homo | ||
| SBS | Chr7 | 22051761 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g36810 |
| SBS | Chr7 | 24168479 | G-T | Homo | ||
| SBS | Chr7 | 24168482 | A-T | Homo | ||
| SBS | Chr7 | 27711979 | C-T | Homo | ||
| SBS | Chr8 | 3165596 | A-G | Homo | ||
| SBS | Chr8 | 7426132 | G-C | HET | ||
| SBS | Chr9 | 9699444 | G-A | HET | ||
| SBS | Chr10 | 8596919 | C-T | HET | ||
| SBS | Chr10 | 13914625 | A-T | HET | ||
| SBS | Chr11 | 14800675 | G-A | Homo | ||
| SBS | Chr12 | 1504655 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g03720 |
| SBS | Chr12 | 15578821 | C-G | HET | ||
| SBS | Chr12 | 19741952 | G-A | HET |
Deletions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 1806412 | 1806418 | 6 | |
| Deletion | Chr2 | 16515038 | 16515039 | 1 | |
| Deletion | Chr12 | 26417440 | 26417445 | 5 | LOC_Os12g42520 |
| Deletion | Chr2 | 30877265 | 30877268 | 3 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 18856002 | 18856006 | 5 | |
| Insertion | Chr12 | 8548657 | 8548658 | 2 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 9717257 | 9904712 | |
| Inversion | Chr1 | 9717289 | 9904725 | |
| Inversion | Chr10 | 13915558 | 14038296 | LOC_Os10g26650 |
| Inversion | Chr10 | 14062266 | 14961121 | LOC_Os10g28680 |
| Inversion | Chr10 | 21183651 | 21393291 | LOC_Os10g39950 |
| Inversion | Chr10 | 21183654 | 21393299 | LOC_Os10g39950 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 2147144 | Chr11 | 5073923 | |
| Translocation | Chr10 | 2607721 | Chr6 | 15332763 | LOC_Os10g05270 |
| Translocation | Chr4 | 3844939 | Chr3 | 13382505 | |
| Translocation | Chr12 | 6015144 | Chr8 | 7185780 | |
| Translocation | Chr8 | 12055501 | Chr6 | 21198577 | 2 |
| Translocation | Chr8 | 14574357 | Chr3 | 19268122 | |
| Translocation | Chr10 | 16098062 | Chr7 | 4798226 | LOC_Os10g30870 |
| Translocation | Chr5 | 20725910 | Chr2 | 5558233 | LOC_Os05g34880 |
| Translocation | Chr3 | 28717934 | Chr2 | 6171094 | |
| Translocation | Chr6 | 29396709 | Chr5 | 22353058 |