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| Mutant Information |
|---|
| Mutant Name | FN4089-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4089-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12105452 | C-T | HET | ||
| SBS | Chr1 | 14988743 | T-A | Homo | ||
| SBS | Chr1 | 24174199 | C-T | HET | ||
| SBS | Chr10 | 12213831 | G-A | Homo | ||
| SBS | Chr10 | 12213832 | G-A | Homo | ||
| SBS | Chr11 | 2093295 | T-A | HET | ||
| SBS | Chr11 | 2339944 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g05280 |
| SBS | Chr12 | 11464627 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g19670 |
| SBS | Chr12 | 21963781 | A-T | HET | ||
| SBS | Chr3 | 17878694 | C-A | HET | ||
| SBS | Chr3 | 22947104 | C-T | HET | ||
| SBS | Chr3 | 27299613 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g48010 |
| SBS | Chr3 | 5154559 | C-A | HET | ||
| SBS | Chr3 | 8268334 | C-T | HET | ||
| SBS | Chr4 | 13224447 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g23220 |
| SBS | Chr4 | 7434667 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g13364 |
| SBS | Chr6 | 27513899 | C-T | Homo | ||
| SBS | Chr7 | 19044128 | T-C | HET | ||
| SBS | Chr7 | 19156138 | C-T | HET | ||
| SBS | Chr7 | 2906909 | T-A | HET | ||
| SBS | Chr9 | 3222982 | G-C | HET | ||
| SBS | Chr9 | 3222991 | G-A | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 6166098 | 6166102 | 4 | |
| Deletion | Chr5 | 7026681 | 7026696 | 15 | |
| Deletion | Chr1 | 10178376 | 10178503 | 127 | |
| Deletion | Chr11 | 10757065 | 10757074 | 9 | |
| Deletion | Chr8 | 11297239 | 11297240 | 1 | LOC_Os08g18940 |
| Deletion | Chr1 | 13066033 | 13066034 | 1 | |
| Deletion | Chr9 | 19849632 | 19849634 | 2 | |
| Deletion | Chr12 | 20271151 | 20271163 | 12 | |
| Deletion | Chr7 | 21424897 | 21424902 | 5 | |
| Deletion | Chr9 | 22038758 | 22038759 | 1 | LOC_Os09g38310 |
| Deletion | Chr6 | 26040830 | 26040842 | 12 | |
| Deletion | Chr3 | 26982866 | 26982870 | 4 | |
| Deletion | Chr1 | 41444064 | 41444082 | 18 | |
| Deletion | Chr1 | 43132876 | 43132890 | 14 | LOC_Os01g74470 |
Insertions: 5
No Inversion
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 986546 | Chr4 | 20112251 | |
| Translocation | Chr7 | 10504279 | Chr1 | 19823200 | |
| Translocation | Chr12 | 11276954 | Chr8 | 5561923 | LOC_Os12g19381 |
| Translocation | Chr8 | 12465040 | Chr4 | 34006287 | |
| Translocation | Chr6 | 23399511 | Chr5 | 365671 | LOC_Os05g01610 |
| Translocation | Chr2 | 34569238 | Chr1 | 3126912 |