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| Mutant Information |
|---|
| Mutant Name | FN4090-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4090-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 28962461 | C-T | Homo | ||
| SBS | Chr1 | 3129725 | A-T | HET | ||
| SBS | Chr1 | 42218930 | T-A | HET | ||
| SBS | Chr10 | 10227234 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g20330 |
| SBS | Chr10 | 11196508 | A-G | HET | ||
| SBS | Chr10 | 12614765 | T-G | HET | ||
| SBS | Chr11 | 20477462 | G-A | HET | ||
| SBS | Chr11 | 24859814 | C-T | HET | ||
| SBS | Chr11 | 7415736 | G-T | HET | ||
| SBS | Chr11 | 7843452 | G-A | HET | ||
| SBS | Chr2 | 13412720 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g22460 |
| SBS | Chr2 | 1379412 | A-G | HET | ||
| SBS | Chr2 | 19521862 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g32870 |
| SBS | Chr2 | 19554705 | A-T | HET | ||
| SBS | Chr2 | 23415928 | T-C | HET | ||
| SBS | Chr2 | 35147451 | A-T | Homo | ||
| SBS | Chr2 | 7625104 | G-A | HET | ||
| SBS | Chr3 | 18549048 | C-G | HET | ||
| SBS | Chr3 | 21444129 | C-T | HET | ||
| SBS | Chr3 | 28582717 | G-T | HET | ||
| SBS | Chr3 | 28984926 | A-G | Homo | ||
| SBS | Chr3 | 9005469 | C-A | HET | ||
| SBS | Chr4 | 14547660 | G-A | Homo | ||
| SBS | Chr4 | 19958108 | G-C | HET | ||
| SBS | Chr5 | 20512475 | C-T | HET | ||
| SBS | Chr5 | 21777111 | G-A | HET | STOP_GAINED | LOC_Os05g37230 |
| SBS | Chr5 | 3579783 | C-T | Homo | ||
| SBS | Chr5 | 4207622 | G-C | Homo | ||
| SBS | Chr6 | 30538151 | T-A | Homo | ||
| SBS | Chr7 | 11558537 | C-G | HET | ||
| SBS | Chr7 | 16584669 | C-T | HET | ||
| SBS | Chr8 | 10921244 | C-T | HET | ||
| SBS | Chr9 | 12794485 | A-T | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1718955 | 1718957 | 2 | |
| Deletion | Chr6 | 3770066 | 3770083 | 17 | LOC_Os06g07770 |
| Deletion | Chr9 | 7041055 | 7041061 | 6 | |
| Deletion | Chr12 | 10969773 | 10969774 | 1 | |
| Deletion | Chr12 | 14301651 | 14301653 | 2 | |
| Deletion | Chr4 | 16988303 | 16988316 | 13 | |
| Deletion | Chr4 | 24449988 | 24450000 | 12 | |
| Deletion | Chr12 | 26774208 | 26774211 | 3 | |
| Deletion | Chr8 | 27625588 | 27625590 | 2 | |
| Deletion | Chr4 | 33206234 | 33206253 | 19 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 1918329 | 1918329 | 1 | |
| Insertion | Chr4 | 33911351 | 33911351 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 1448465 | 2300969 | 2 |
| Inversion | Chr2 | 7811648 | 8157861 | LOC_Os02g14750 |
| Inversion | Chr2 | 7811659 | 8158002 | LOC_Os02g14750 |
| Inversion | Chr7 | 23213565 | 23241261 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 10070851 | Chr5 | 5212167 | LOC_Os05g09330 |
| Translocation | Chr6 | 10174327 | Chr5 | 29777275 | |
| Translocation | Chr7 | 12281597 | Chr1 | 30943066 | |
| Translocation | Chr3 | 15969751 | Chr1 | 27384163 | LOC_Os03g27830 |
| Translocation | Chr12 | 18630133 | Chr7 | 6891502 | |
| Translocation | Chr9 | 20546969 | Chr6 | 23626448 | LOC_Os09g35720 |