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| Mutant Information |
|---|
| Mutant Name | FN4093-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4093-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17979069 | T-C | HET | ||
| SBS | Chr1 | 26167214 | C-A | HET | ||
| SBS | Chr1 | 27860558 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g48580 |
| SBS | Chr1 | 2847443 | A-G | HET | ||
| SBS | Chr1 | 29344398 | G-C | Homo | ||
| SBS | Chr1 | 30035928 | G-A | HET | STOP_GAINED | LOC_Os01g52250 |
| SBS | Chr1 | 3905569 | T-A | HET | ||
| SBS | Chr1 | 7486901 | C-T | Homo | ||
| SBS | Chr10 | 12587520 | G-T | Homo | ||
| SBS | Chr10 | 21816941 | G-A | Homo | ||
| SBS | Chr11 | 23780272 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g39900 |
| SBS | Chr12 | 10120916 | G-A | Homo | ||
| SBS | Chr2 | 13068550 | A-G | HET | ||
| SBS | Chr2 | 2167131 | A-T | HET | ||
| SBS | Chr2 | 22943109 | C-T | Homo | ||
| SBS | Chr3 | 13142377 | C-T | HET | ||
| SBS | Chr3 | 14890749 | A-G | HET | ||
| SBS | Chr3 | 15742157 | T-C | Homo | ||
| SBS | Chr3 | 27196790 | A-T | Homo | ||
| SBS | Chr4 | 15009549 | G-T | HET | ||
| SBS | Chr4 | 19395420 | A-T | HET | ||
| SBS | Chr4 | 25832798 | C-T | HET | ||
| SBS | Chr5 | 19764182 | A-T | HET | ||
| SBS | Chr5 | 24502908 | G-A | Homo | ||
| SBS | Chr6 | 29521653 | A-C | Homo | ||
| SBS | Chr6 | 30841376 | G-T | HET | ||
| SBS | Chr6 | 7091040 | T-A | HET | ||
| SBS | Chr6 | 8113518 | T-C | HET | ||
| SBS | Chr7 | 18011209 | G-T | HET | ||
| SBS | Chr7 | 28356133 | C-T | HET | ||
| SBS | Chr8 | 13688464 | C-T | HET | ||
| SBS | Chr8 | 18041013 | C-A | HET | ||
| SBS | Chr9 | 16596232 | G-A | Homo | ||
| SBS | Chr9 | 17552190 | A-G | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 692866 | 692867 | 1 | LOC_Os06g02220 |
| Deletion | Chr3 | 1309248 | 1309258 | 10 | |
| Deletion | Chr12 | 2091227 | 2091228 | 1 | |
| Deletion | Chr6 | 3153001 | 3223000 | 69999 | 11 |
| Deletion | Chr6 | 3234001 | 3336000 | 101999 | 18 |
| Deletion | Chr5 | 3382043 | 3382051 | 8 | |
| Deletion | Chr8 | 5728756 | 5728760 | 4 | LOC_Os08g09920 |
| Deletion | Chr8 | 6356670 | 6356671 | 1 | |
| Deletion | Chr10 | 13763079 | 13763080 | 1 | LOC_Os10g26430 |
| Deletion | Chr4 | 17454984 | 17454985 | 1 | |
| Deletion | Chr12 | 18348520 | 18348529 | 9 | |
| Deletion | Chr8 | 26409609 | 26409622 | 13 | |
| Deletion | Chr3 | 27203661 | 27203663 | 2 | |
| Deletion | Chr1 | 29228659 | 29228664 | 5 | |
| Deletion | Chr2 | 31157795 | 31157800 | 5 | |
| Deletion | Chr3 | 32874372 | 32874387 | 15 | LOC_Os03g57680 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 18079442 | 18079442 | 1 | |
| Insertion | Chr3 | 13386871 | 13386871 | 1 | |
| Insertion | Chr5 | 2697098 | 2697103 | 6 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 17246102 | 17246441 | LOC_Os02g29130 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 5007001 | Chr4 | 1571202 | LOC_Os04g03579 |
| Translocation | Chr3 | 10134125 | Chr2 | 19415633 | LOC_Os02g32690 |
| Translocation | Chr9 | 11617847 | Chr4 | 13242539 | |
| Translocation | Chr11 | 22528993 | Chr9 | 902065 | LOC_Os11g37990 |
| Translocation | Chr10 | 22790219 | Chr9 | 1626370 | LOC_Os10g42340 |
| Translocation | Chr11 | 25810663 | Chr7 | 12810133 | |
| Translocation | Chr12 | 27012341 | Chr2 | 8113866 | |
| Translocation | Chr12 | 27234723 | Chr10 | 22627268 |