Search Results
| Mutant Information |
|---|
| Mutant Name | FN4095-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4095-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8344476 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g14890 |
| SBS | Chr1 | 12053282 | G-A | Homo | ||
| SBS | Chr1 | 17852245 | G-A | HET | ||
| SBS | Chr2 | 22964396 | A-T | HET | ||
| SBS | Chr2 | 28428873 | T-C | Homo | ||
| SBS | Chr2 | 28808197 | C-T | Homo | ||
| SBS | Chr3 | 6072615 | C-A | Homo | ||
| SBS | Chr3 | 6072616 | T-A | Homo | ||
| SBS | Chr3 | 22196267 | C-A | Homo | ||
| SBS | Chr4 | 14904095 | G-A | HET | ||
| SBS | Chr4 | 25220651 | C-T | HET | ||
| SBS | Chr5 | 14106399 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g24420 |
| SBS | Chr7 | 4638217 | G-A | Homo | ||
| SBS | Chr7 | 12990480 | G-A | Homo | ||
| SBS | Chr7 | 24641655 | A-T | Homo | ||
| SBS | Chr8 | 10539419 | A-T | Homo | ||
| SBS | Chr9 | 4076991 | G-A | Homo | ||
| SBS | Chr9 | 5709653 | G-C | Homo | ||
| SBS | Chr10 | 463654 | A-G | Homo | ||
| SBS | Chr10 | 3362704 | T-A | Homo | ||
| SBS | Chr10 | 8385499 | G-C | HET | ||
| SBS | Chr10 | 8864706 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g17570 |
| SBS | Chr10 | 9406615 | A-G | HET | ||
| SBS | Chr10 | 17105586 | A-T | Homo |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 690784 | 690797 | 13 | LOC_Os01g02250 |
| Deletion | Chr10 | 2922260 | 2922266 | 6 | LOC_Os10g05790 |
| Deletion | Chr9 | 4765653 | 4765654 | 1 | LOC_Os09g08960 |
| Deletion | Chr8 | 13463676 | 13463677 | 1 | LOC_Os08g22340 |
| Deletion | Chr1 | 13569583 | 13569586 | 3 | |
| Deletion | Chr5 | 14285671 | 14285672 | 1 | LOC_Os05g24680 |
| Deletion | Chr3 | 28688228 | 28688254 | 26 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 14316094 | 14316095 | 2 | |
| Insertion | Chr1 | 13494243 | 13494251 | 9 | |
| Insertion | Chr3 | 19571715 | 19571716 | 2 | |
| Insertion | Chr6 | 29315419 | 29315419 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 3056127 | 3791121 | LOC_Os02g07340 |
| Inversion | Chr5 | 11091662 | 11379445 | |
| Inversion | Chr5 | 11091675 | 11379449 | |
| Inversion | Chr1 | 29114248 | 29660239 | LOC_Os01g50690 |
| Inversion | Chr1 | 29114281 | 29660240 | LOC_Os01g50690 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1243 | Chr2 | 162 | |
| Translocation | Chr11 | 1285879 | Chr2 | 2984155 | LOC_Os11g03400 |
| Translocation | Chr5 | 3964561 | Chr3 | 25794543 | |
| Translocation | Chr11 | 13674096 | Chr8 | 3231009 | |
| Translocation | Chr9 | 16923022 | Chr7 | 5329639 | 2 |
| Translocation | Chr11 | 25330089 | Chr7 | 5262514 |