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Mutant Information |
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Mutant Name | FN4096-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4096-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 22
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 24365967 | C-T | Homo | ||
SBS | Chr1 | 32564444 | G-C | HET | ||
SBS | Chr1 | 32757666 | C-T | HET | ||
SBS | Chr1 | 35269723 | C-T | HET | ||
SBS | Chr1 | 37099260 | A-G | HET | ||
SBS | Chr1 | 37947535 | A-G | HET | ||
SBS | Chr1 | 42454091 | G-A | HET | ||
SBS | Chr2 | 20961076 | A-T | Homo | ||
SBS | Chr3 | 1925162 | T-A | Homo | ||
SBS | Chr3 | 3147804 | G-A | HET | ||
SBS | Chr3 | 28265334 | G-A | Homo | ||
SBS | Chr4 | 31306973 | G-A | Homo | ||
SBS | Chr5 | 5949106 | C-T | HET | ||
SBS | Chr5 | 15982193 | C-T | HET | ||
SBS | Chr6 | 3731152 | A-T | HET | ||
SBS | Chr8 | 1413006 | T-A | Homo | ||
SBS | Chr8 | 1413007 | G-T | Homo | ||
SBS | Chr8 | 11158096 | G-C | HET | ||
SBS | Chr10 | 3569015 | G-A | HET | ||
SBS | Chr10 | 14005500 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g26770 |
SBS | Chr12 | 12478378 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g22150 |
SBS | Chr12 | 23228604 | G-A | HET |
Deletions: 6
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr9 | 4817289 | 4817293 | 4 | |
Deletion | Chr6 | 11011066 | 11011067 | 1 | LOC_Os06g19350 |
Deletion | Chr4 | 14881217 | 14881225 | 8 | |
Deletion | Chr2 | 26682144 | 26682146 | 2 | |
Deletion | Chr2 | 26912808 | 26912897 | 89 | |
Deletion | Chr2 | 32920942 | 32920948 | 6 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr5 | 9992062 | 9992066 | 5 | |
Insertion | Chr12 | 10489113 | 10489113 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr5 | 4645581 | 4934265 | LOC_Os05g08510 |
Inversion | Chr5 | 4645589 | 4934291 | LOC_Os05g08510 |
Inversion | Chr7 | 11783648 | 12002347 | LOC_Os07g20410 |
Translocations: 10
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 5127076 | Chr3 | 13468739 | 2 |
Translocation | Chr3 | 14688079 | Chr1 | 3013134 | |
Translocation | Chr4 | 17228510 | Chr3 | 26761877 | LOC_Os03g47310 |
Translocation | Chr8 | 17299160 | Chr4 | 18885956 | LOC_Os08g28350 |
Translocation | Chr9 | 18185193 | Chr1 | 10304637 | LOC_Os09g29910 |
Translocation | Chr8 | 18631193 | Chr7 | 16354721 | 2 |
Translocation | Chr8 | 18648503 | Chr2 | 12700669 | |
Translocation | Chr7 | 25127690 | Chr2 | 21836310 | |
Translocation | Chr11 | 27415899 | Chr9 | 22016151 | |
Translocation | Chr3 | 32433143 | Chr2 | 8729142 | 2 |