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| Mutant Information |
|---|
| Mutant Name | FN4098-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4098-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 43140227 | A-G | HET | ||
| SBS | Chr11 | 18769371 | T-C | HET | ||
| SBS | Chr12 | 15941981 | G-A | HET | ||
| SBS | Chr12 | 20354057 | C-G | HET | ||
| SBS | Chr12 | 9885035 | G-A | HET | ||
| SBS | Chr2 | 16772548 | A-T | HET | ||
| SBS | Chr2 | 8903958 | C-T | Homo | ||
| SBS | Chr3 | 14421313 | A-G | HET | ||
| SBS | Chr3 | 19394700 | C-A | HET | ||
| SBS | Chr3 | 29453638 | G-T | HET | ||
| SBS | Chr4 | 12471907 | G-A | HET | ||
| SBS | Chr4 | 13892779 | C-A | HET | ||
| SBS | Chr4 | 2361885 | C-A | HET | ||
| SBS | Chr4 | 31201196 | A-T | HET | ||
| SBS | Chr4 | 5321588 | G-C | Homo | ||
| SBS | Chr5 | 10469308 | T-A | HET | ||
| SBS | Chr5 | 13478402 | T-A | HET | ||
| SBS | Chr5 | 14236600 | A-G | HET | ||
| SBS | Chr5 | 22072005 | C-T | HET | ||
| SBS | Chr5 | 493718 | G-A | HET | ||
| SBS | Chr6 | 27535646 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g45520 |
| SBS | Chr7 | 18863502 | G-A | HET | ||
| SBS | Chr8 | 5370164 | C-T | Homo | ||
| SBS | Chr8 | 8670372 | T-C | Homo | ||
| SBS | Chr9 | 11369841 | C-T | Homo | ||
| SBS | Chr9 | 2314037 | G-A | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 2060301 | 2060303 | 2 | |
| Deletion | Chr5 | 4530110 | 4530111 | 1 | |
| Deletion | Chr7 | 5268117 | 5268122 | 5 | |
| Deletion | Chr11 | 5395600 | 5395618 | 18 | |
| Deletion | Chr9 | 6521521 | 6521522 | 1 | |
| Deletion | Chr11 | 9865622 | 9865637 | 15 | |
| Deletion | Chr9 | 10995796 | 10995800 | 4 | |
| Deletion | Chr5 | 22766271 | 22766275 | 4 | LOC_Os05g38810 |
| Deletion | Chr12 | 26309001 | 26365000 | 55999 | 10 |
| Deletion | Chr5 | 26805638 | 26805648 | 10 | |
| Deletion | Chr6 | 28341511 | 28341514 | 3 | |
| Deletion | Chr1 | 41305075 | 41305076 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 26329162 | 26329162 | 1 | |
| Insertion | Chr2 | 27576746 | 27576746 | 1 | |
| Insertion | Chr8 | 13853041 | 13853044 | 4 | |
| Insertion | Chr8 | 21300820 | 21300822 | 3 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 5640929 | 5641105 | LOC_Os01g10580 |
| Inversion | Chr7 | 28969844 | 28970155 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 6977645 | Chr3 | 2404528 | 3 |
| Translocation | Chr12 | 16453446 | Chr9 | 13333418 | LOC_Os09g22010 |
| Translocation | Chr12 | 26365286 | Chr6 | 13743347 | 2 |
| Translocation | Chr12 | 26369284 | Chr6 | 13743339 | 2 |
| Translocation | Chr12 | 26369319 | Chr9 | 15284259 | 2 |
| Translocation | Chr12 | 26370886 | Chr9 | 15284257 | 2 |