Search Results
| Mutant Information |
|---|
| Mutant Name | FN410-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN410-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16382231 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g29230 |
| SBS | Chr1 | 42965287 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 3057258 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 33832535 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 5024961 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 11906669 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr3 | 13510717 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 18818890 | C-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 21630774 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 31042712 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 5621693 | G-A | HOMO | INTRON | |
| SBS | Chr4 | 19636851 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 1376982 | A-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 1377011 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g03350 |
| SBS | Chr5 | 1377012 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 1378827 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g03360 |
| SBS | Chr6 | 3219694 | C-T | HOMO | INTRON | |
| SBS | Chr7 | 2458484 | T-G | HOMO | UTR_3_PRIME | |
| SBS | Chr7 | 7296632 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 11002016 | G-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 1818973 | T-C | HET | INTRON | |
| SBS | Chr9 | 6872083 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 15005907 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 19926065 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 23094139 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 11917951 | T-G | HOMO | INTRON | |
| SBS | Chr11 | 21507584 | T-A | HET | INTRON | |
| SBS | Chr12 | 456953 | G-C | HOMO | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1223455 | 1232666 | 9211 | 3 |
| Deletion | Chr5 | 2977896 | 2977908 | 12 | LOC_Os05g05950 |
| Deletion | Chr5 | 3101363 | 3101369 | 6 | |
| Deletion | Chr9 | 3980618 | 3980632 | 14 | |
| Deletion | Chr7 | 4389412 | 4389413 | 1 | |
| Deletion | Chr5 | 7388520 | 7388525 | 5 | |
| Deletion | Chr9 | 11446392 | 11446396 | 4 | |
| Deletion | Chr2 | 12587756 | 12587766 | 10 | |
| Deletion | Chr9 | 13533979 | 13533985 | 6 | LOC_Os09g22410 |
| Deletion | Chr7 | 14815654 | 14815660 | 6 | |
| Deletion | Chr6 | 16222199 | 16222241 | 42 | |
| Deletion | Chr7 | 18249979 | 18249980 | 1 | |
| Deletion | Chr5 | 24518527 | 24518536 | 9 | |
| Deletion | Chr1 | 32459984 | 32459988 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 31125907 | 31125907 | 1 | |
| Insertion | Chr7 | 14601802 | 14601802 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 4548469 | 5224773 | 2 |
| Inversion | Chr7 | 4548483 | 5224774 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 3276268 | Chr3 | 5677139 | |
| Translocation | Chr8 | 3276341 | Chr3 | 5676665 | |
| Translocation | Chr7 | 18237087 | Chr2 | 6778580 | LOC_Os07g30810 |
| Translocation | Chr6 | 26232174 | Chr3 | 7311415 | LOC_Os06g43610 |
| Translocation | Chr6 | 26236417 | Chr3 | 7311405 | LOC_Os06g43620 |