Search Results
| Mutant Information |
|---|
| Mutant Name | FN4100-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4100-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16829957 | C-T | HET | ||
| SBS | Chr1 | 16914866 | C-T | HET | ||
| SBS | Chr2 | 2504479 | G-A | HET | ||
| SBS | Chr2 | 2504480 | A-T | HET | ||
| SBS | Chr2 | 20989222 | G-A | Homo | ||
| SBS | Chr2 | 25340155 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g42134 |
| SBS | Chr4 | 15413829 | T-G | HET | ||
| SBS | Chr4 | 27535630 | C-T | HET | ||
| SBS | Chr4 | 27649471 | T-G | HET | ||
| SBS | Chr4 | 29865750 | A-C | HET | ||
| SBS | Chr4 | 33488249 | T-C | HET | ||
| SBS | Chr4 | 34297524 | C-A | HET | ||
| SBS | Chr5 | 14343444 | G-A | HET | ||
| SBS | Chr6 | 26626983 | G-A | HET | ||
| SBS | Chr7 | 2605420 | G-C | HET | ||
| SBS | Chr7 | 4843563 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g09240 |
| SBS | Chr7 | 16350253 | C-A | HET | ||
| SBS | Chr7 | 16350254 | A-T | HET | ||
| SBS | Chr7 | 28706966 | T-A | Homo | ||
| SBS | Chr8 | 17247881 | C-T | Homo | ||
| SBS | Chr8 | 23505567 | C-T | HET | ||
| SBS | Chr9 | 5798614 | G-A | Homo | ||
| SBS | Chr9 | 11403039 | G-A | HET | ||
| SBS | Chr11 | 9524893 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g17150 |
| SBS | Chr11 | 26655745 | G-T | HET | ||
| SBS | Chr11 | 26655750 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g44150 |
| SBS | Chr11 | 27288269 | C-T | HET | ||
| SBS | Chr12 | 4124400 | A-T | HET | ||
| SBS | Chr12 | 11613192 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g19930 |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 4252302 | 4252303 | 1 | |
| Deletion | Chr6 | 4403097 | 4403100 | 3 | |
| Deletion | Chr4 | 4942748 | 4942756 | 8 | |
| Deletion | Chr7 | 9747416 | 9747439 | 23 | |
| Deletion | Chr12 | 10622625 | 10622637 | 12 | |
| Deletion | Chr1 | 13907024 | 13907026 | 2 | |
| Deletion | Chr9 | 17019314 | 17019320 | 6 | |
| Deletion | Chr9 | 17278717 | 17278723 | 6 | |
| Deletion | Chr10 | 17455964 | 17455965 | 1 | |
| Deletion | Chr7 | 18128579 | 18128589 | 10 | |
| Deletion | Chr6 | 18237613 | 18237637 | 24 | |
| Deletion | Chr2 | 18868717 | 18868720 | 3 | |
| Deletion | Chr9 | 22690800 | 22690802 | 2 | |
| Deletion | Chr4 | 23790471 | 23790478 | 7 | |
| Deletion | Chr12 | 24664999 | 24665001 | 2 | |
| Deletion | Chr8 | 25080927 | 25080932 | 5 | |
| Deletion | Chr6 | 26609001 | 26623000 | 13999 | LOC_Os06g44130 |
| Deletion | Chr11 | 28437070 | 28437071 | 1 | LOC_Os11g47290 |
| Deletion | Chr6 | 29457993 | 29457998 | 5 |
Insertions: 7
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 31596797 | 31791137 | LOC_Os02g51910 |
| Inversion | Chr2 | 31596802 | 31791137 | LOC_Os02g51910 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 4757267 | Chr4 | 1178866 | |
| Translocation | Chr5 | 5212055 | Chr1 | 26217213 | 2 |
| Translocation | Chr11 | 10600621 | Chr6 | 26628077 | |
| Translocation | Chr11 | 10600640 | Chr6 | 26623035 | |
| Translocation | Chr8 | 20533833 | Chr4 | 7877666 | LOC_Os08g33050 |
| Translocation | Chr7 | 23899362 | Chr1 | 38299171 | LOC_Os07g39850 |
| Translocation | Chr7 | 23902457 | Chr1 | 38299178 |