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| Mutant Information |
|---|
| Mutant Name | FN4101-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4101-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 33729527 | T-G | HET | ||
| SBS | Chr1 | 35847306 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g61930 |
| SBS | Chr1 | 35847307 | C-A | HET | STOP_GAINED | LOC_Os01g61930 |
| SBS | Chr1 | 797370 | A-G | HET | ||
| SBS | Chr10 | 16709883 | C-T | HET | ||
| SBS | Chr10 | 22620442 | G-A | HET | ||
| SBS | Chr11 | 13360905 | G-C | HET | ||
| SBS | Chr11 | 19522116 | A-G | HET | ||
| SBS | Chr12 | 15535696 | T-C | HET | ||
| SBS | Chr2 | 12933344 | C-T | HET | ||
| SBS | Chr2 | 16849058 | T-C | HET | ||
| SBS | Chr2 | 25164151 | A-T | HET | ||
| SBS | Chr2 | 28404825 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g46580 |
| SBS | Chr3 | 27722585 | G-A | HET | ||
| SBS | Chr3 | 4091165 | A-C | HET | ||
| SBS | Chr4 | 12600193 | T-G | Homo | ||
| SBS | Chr4 | 15385419 | C-A | HET | ||
| SBS | Chr4 | 6061168 | T-C | Homo | ||
| SBS | Chr6 | 15730370 | C-T | HET | ||
| SBS | Chr6 | 7757943 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g13920 |
| SBS | Chr7 | 10578109 | C-G | Homo | ||
| SBS | Chr7 | 23959339 | T-C | Homo | ||
| SBS | Chr7 | 2474401 | A-T | HET | ||
| SBS | Chr7 | 25799362 | G-A | Homo | ||
| SBS | Chr7 | 7213718 | T-A | Homo | ||
| SBS | Chr8 | 10375232 | C-T | HET | ||
| SBS | Chr8 | 3472037 | A-T | Homo | ||
| SBS | Chr8 | 8577915 | A-T | HET | ||
| SBS | Chr9 | 17131389 | C-T | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1600091 | 1600094 | 3 | |
| Deletion | Chr6 | 2725181 | 2725184 | 3 | LOC_Os06g05950 |
| Deletion | Chr7 | 7214748 | 7214750 | 2 | LOC_Os07g12620 |
| Deletion | Chr1 | 8363295 | 8363298 | 3 | |
| Deletion | Chr3 | 17220593 | 17220597 | 4 | LOC_Os03g30170 |
| Deletion | Chr3 | 17308988 | 17308989 | 1 | |
| Deletion | Chr6 | 24164740 | 24164741 | 1 | |
| Deletion | Chr4 | 28551109 | 28551119 | 10 | |
| Deletion | Chr4 | 29402827 | 29402834 | 7 | |
| Deletion | Chr3 | 33355650 | 33355651 | 1 | |
| Deletion | Chr2 | 34523282 | 34523314 | 32 | LOC_Os02g56390 |
| Deletion | Chr1 | 37530662 | 37530680 | 18 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 8811236 | 8811497 | 262 | LOC_Os06g15540 |
| Insertion | Chr7 | 8263461 | 8263461 | 1 | |
| Insertion | Chr8 | 6443584 | 6443610 | 27 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 4877864 | 5121986 | LOC_Os02g09900 |
| Inversion | Chr2 | 4877870 | 5121987 | LOC_Os02g09900 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 10697003 | Chr4 | 14802054 | LOC_Os11g18830 |
| Translocation | Chr11 | 10704023 | Chr4 | 29193836 | |
| Translocation | Chr9 | 11926996 | Chr7 | 23435015 | |
| Translocation | Chr4 | 14804424 | Chr2 | 7578056 | LOC_Os02g13920 |