Search Results
| Mutant Information |
|---|
| Mutant Name | FN4103-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4103-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3569964 | C-T | HET | SPLICE_SITE_DONOR | LOC_Os01g07490 |
| SBS | Chr1 | 4456346 | C-T | HET | ||
| SBS | Chr1 | 9800536 | A-T | HET | ||
| SBS | Chr1 | 10568130 | T-G | HET | ||
| SBS | Chr1 | 24127514 | A-T | HET | ||
| SBS | Chr1 | 27551727 | C-T | HET | ||
| SBS | Chr1 | 29594853 | G-A | HET | ||
| SBS | Chr2 | 11535329 | T-A | HET | ||
| SBS | Chr2 | 15811534 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g26920 |
| SBS | Chr3 | 30929718 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g53950 |
| SBS | Chr5 | 1484471 | G-T | HET | ||
| SBS | Chr5 | 12860591 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g22660 |
| SBS | Chr5 | 18894515 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g32390 |
| SBS | Chr6 | 8432744 | C-T | Homo | ||
| SBS | Chr7 | 4068963 | G-A | Homo | ||
| SBS | Chr7 | 8591240 | C-T | HET | ||
| SBS | Chr8 | 18391490 | G-C | HET | ||
| SBS | Chr10 | 5255825 | T-C | HET | ||
| SBS | Chr11 | 17132501 | G-T | Homo | ||
| SBS | Chr12 | 12755017 | C-T | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 10312712 | 10312728 | 16 | LOC_Os09g16880 |
| Deletion | Chr9 | 12137510 | 12137511 | 1 | |
| Deletion | Chr3 | 13336292 | 13336295 | 3 | LOC_Os03g23070 |
| Deletion | Chr1 | 16851042 | 16851043 | 1 | |
| Deletion | Chr2 | 18677730 | 18677737 | 7 | |
| Deletion | Chr6 | 20058992 | 20058994 | 2 | |
| Deletion | Chr3 | 22939255 | 22939256 | 1 |
Insertions: 7
No Inversion
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1149228 | Chr1 | 18329563 | LOC_Os01g33260 |
| Translocation | Chr12 | 3253819 | Chr11 | 21096707 | 2 |
| Translocation | Chr7 | 3521801 | Chr1 | 14847778 | LOC_Os07g07130 |
| Translocation | Chr7 | 4475061 | Chr5 | 20456239 | LOC_Os05g34500 |
| Translocation | Chr7 | 4480174 | Chr5 | 20456243 | LOC_Os05g34500 |
| Translocation | Chr11 | 4842569 | Chr9 | 22163469 | LOC_Os09g38520 |
| Translocation | Chr8 | 7455821 | Chr2 | 16612646 | |
| Translocation | Chr3 | 17524988 | Chr1 | 3141194 | LOC_Os03g30750 |
| Translocation | Chr12 | 25707763 | Chr8 | 15193357 | |
| Translocation | Chr6 | 25881774 | Chr2 | 10193026 | |
| Translocation | Chr11 | 26331262 | Chr10 | 20813215 | LOC_Os10g39044 |