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| Mutant Information |
|---|
| Mutant Name | FN4104-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4104-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12891436 | T-C | Homo | ||
| SBS | Chr1 | 4341138 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g08710 |
| SBS | Chr10 | 4590770 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g08450 |
| SBS | Chr12 | 20160410 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g33330 |
| SBS | Chr12 | 21190553 | G-A | HET | ||
| SBS | Chr12 | 26668865 | T-A | HET | ||
| SBS | Chr12 | 26668866 | C-T | HET | ||
| SBS | Chr2 | 10946798 | C-T | Homo | ||
| SBS | Chr2 | 15201081 | A-T | Homo | ||
| SBS | Chr2 | 32821856 | G-T | Homo | ||
| SBS | Chr2 | 34282939 | C-T | Homo | ||
| SBS | Chr3 | 767187 | G-A | HET | STOP_GAINED | LOC_Os03g02260 |
| SBS | Chr4 | 18162125 | G-T | HET | ||
| SBS | Chr5 | 11404211 | C-G | HET | ||
| SBS | Chr5 | 18749382 | G-A | Homo | ||
| SBS | Chr6 | 30406319 | T-A | HET | ||
| SBS | Chr7 | 18848939 | C-G | Homo | ||
| SBS | Chr7 | 8089703 | C-T | HET | ||
| SBS | Chr8 | 7820314 | G-A | HET | ||
| SBS | Chr9 | 4323814 | C-T | HET | ||
| SBS | Chr9 | 4323819 | C-T | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 4952893 | 4952894 | 1 | |
| Deletion | Chr3 | 8619024 | 8619056 | 32 | LOC_Os03g15620 |
| Deletion | Chr6 | 18388060 | 18388061 | 1 | |
| Deletion | Chr8 | 21922302 | 21922305 | 3 | |
| Deletion | Chr1 | 22180356 | 22180358 | 2 | |
| Deletion | Chr11 | 22431314 | 22431322 | 8 | |
| Deletion | Chr12 | 27169001 | 27368000 | 198999 | 35 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 20923822 | 20923822 | 1 | |
| Insertion | Chr10 | 21936603 | 21936603 | 1 | LOC_Os10g40804 |
| Insertion | Chr10 | 8452042 | 8452042 | 1 | |
| Insertion | Chr11 | 26996498 | 26996498 | 1 | |
| Insertion | Chr12 | 4571562 | 4571570 | 9 | LOC_Os12g08850 |
| Insertion | Chr8 | 6448074 | 6448074 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 4074703 | 4269694 | 2 |
| Inversion | Chr6 | 28765665 | 29086564 | 2 |
Translocations: 22
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 4993000 | Chr1 | 14093711 | LOC_Os05g09010 |
| Translocation | Chr5 | 5504804 | Chr2 | 13956850 | 2 |
| Translocation | Chr11 | 7332448 | Chr10 | 1903343 | LOC_Os11g13390 |
| Translocation | Chr10 | 7685655 | Chr6 | 5168933 | 2 |
| Translocation | Chr6 | 8501858 | Chr5 | 12027494 | 2 |
| Translocation | Chr7 | 9650560 | Chr3 | 20523543 | |
| Translocation | Chr7 | 9650698 | Chr3 | 20523543 | |
| Translocation | Chr7 | 9650713 | Chr1 | 14093694 | |
| Translocation | Chr7 | 10246963 | Chr5 | 22423668 | |
| Translocation | Chr11 | 10925089 | Chr2 | 9805956 | |
| Translocation | Chr3 | 13643958 | Chr1 | 2804220 | LOC_Os01g05850 |
| Translocation | Chr6 | 16552093 | Chr4 | 2748318 | 2 |
| Translocation | Chr12 | 16695059 | Chr8 | 20386968 | |
| Translocation | Chr7 | 17295372 | Chr1 | 14628999 | |
| Translocation | Chr11 | 19619708 | Chr4 | 2530360 | LOC_Os04g05104 |
| Translocation | Chr11 | 19852825 | Chr3 | 31201782 | |
| Translocation | Chr11 | 19852836 | Chr1 | 39522046 | |
| Translocation | Chr6 | 20154961 | Chr1 | 25847637 | |
| Translocation | Chr12 | 23132351 | Chr2 | 691366 | LOC_Os02g02210 |
| Translocation | Chr12 | 26145427 | Chr11 | 17687373 | |
| Translocation | Chr11 | 26270210 | Chr7 | 25390415 | LOC_Os11g43520 |
| Translocation | Chr8 | 28412007 | Chr7 | 8173486 | LOC_Os07g14320 |