Search Results
| Mutant Information |
|---|
| Mutant Name | FN4105-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4105-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16507635 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g29450 |
| SBS | Chr1 | 16507636 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g29450 |
| SBS | Chr1 | 35232350 | C-T | Homo | ||
| SBS | Chr2 | 8100758 | T-A | HET | ||
| SBS | Chr2 | 17675689 | G-C | HET | ||
| SBS | Chr2 | 21135404 | T-C | HET | ||
| SBS | Chr2 | 23506511 | A-T | HET | ||
| SBS | Chr2 | 33912130 | G-A | Homo | ||
| SBS | Chr2 | 34666125 | T-C | Homo | ||
| SBS | Chr3 | 11431085 | C-T | HET | ||
| SBS | Chr4 | 16744949 | G-T | HET | ||
| SBS | Chr6 | 422159 | T-G | HET | ||
| SBS | Chr7 | 22565339 | T-A | HET | ||
| SBS | Chr7 | 26634334 | T-G | HET | ||
| SBS | Chr7 | 26634335 | T-C | HET | ||
| SBS | Chr7 | 28078163 | G-T | HET | ||
| SBS | Chr8 | 13302258 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g22030 |
| SBS | Chr8 | 15078319 | T-C | HET | ||
| SBS | Chr8 | 18486324 | T-A | HET | ||
| SBS | Chr10 | 1382694 | T-G | HET | ||
| SBS | Chr10 | 5047009 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g09350 |
| SBS | Chr11 | 7923745 | C-T | HET | ||
| SBS | Chr11 | 9425630 | C-T | Homo |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 7220970 | 7220973 | 3 | LOC_Os08g12270 |
| Deletion | Chr7 | 7515580 | 7515584 | 4 | |
| Deletion | Chr7 | 14181236 | 14181244 | 8 | |
| Deletion | Chr1 | 19960539 | 19960540 | 1 | |
| Deletion | Chr1 | 20823953 | 20823955 | 2 | |
| Deletion | Chr11 | 25327278 | 25327279 | 1 | |
| Deletion | Chr7 | 25715001 | 25773000 | 57999 | 7 |
| Deletion | Chr3 | 33126594 | 33126602 | 8 | |
| Deletion | Chr1 | 33160565 | 33160569 | 4 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 9781337 | 10639781 | LOC_Os08g16030 |
| Inversion | Chr3 | 27673955 | 27930832 | LOC_Os03g48540 |
| Inversion | Chr3 | 27673971 | 27930839 | LOC_Os03g48540 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 141191 | Chr2 | 17016428 | |
| Translocation | Chr4 | 724907 | Chr3 | 31273254 | |
| Translocation | Chr4 | 9968329 | Chr3 | 19375463 | 2 |
| Translocation | Chr12 | 18850182 | Chr4 | 4358428 | |
| Translocation | Chr8 | 20159590 | Chr6 | 3357330 | LOC_Os08g32540 |
| Translocation | Chr6 | 22660429 | Chr3 | 4064966 | LOC_Os06g38294 |
| Translocation | Chr11 | 23278362 | Chr5 | 27174266 | |
| Translocation | Chr7 | 28980130 | Chr2 | 25749099 |