Search Results
| Mutant Information |
|---|
| Mutant Name | FN4106-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4106-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7563446 | C-T | Homo | ||
| SBS | Chr1 | 8015454 | T-C | Homo | ||
| SBS | Chr1 | 17744848 | G-T | HET | ||
| SBS | Chr1 | 35762064 | A-T | HET | ||
| SBS | Chr1 | 35762065 | C-T | HET | ||
| SBS | Chr1 | 36877353 | A-G | HET | ||
| SBS | Chr2 | 31876 | A-G | HET | ||
| SBS | Chr2 | 9878286 | G-T | HET | ||
| SBS | Chr3 | 2417764 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g04990 |
| SBS | Chr3 | 28127535 | C-T | HET | ||
| SBS | Chr4 | 1649517 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g03720 |
| SBS | Chr4 | 28207813 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g47560 |
| SBS | Chr4 | 32879358 | T-C | HET | ||
| SBS | Chr4 | 32895276 | G-T | HET | ||
| SBS | Chr5 | 683939 | G-A | HET | ||
| SBS | Chr5 | 683940 | C-T | HET | ||
| SBS | Chr5 | 27203528 | C-T | HET | ||
| SBS | Chr7 | 15587724 | C-T | HET | ||
| SBS | Chr8 | 4788907 | A-T | Homo | ||
| SBS | Chr8 | 16750277 | T-C | Homo | ||
| SBS | Chr8 | 17981483 | C-G | Homo | ||
| SBS | Chr9 | 8859159 | C-T | Homo | ||
| SBS | Chr9 | 17560735 | T-A | Homo | ||
| SBS | Chr11 | 23109704 | G-A | HET | ||
| SBS | Chr12 | 16691069 | T-C | HET | ||
| SBS | Chr12 | 22264244 | A-C | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 682001 | 713000 | 30999 | 4 |
| Deletion | Chr12 | 4648337 | 4648338 | 1 | |
| Deletion | Chr5 | 4683001 | 4703000 | 19999 | 3 |
| Deletion | Chr3 | 4884547 | 4884548 | 1 | |
| Deletion | Chr1 | 6424543 | 6424546 | 3 | |
| Deletion | Chr10 | 7124841 | 7124848 | 7 | LOC_Os10g12760 |
| Deletion | Chr9 | 8700399 | 8700409 | 10 | |
| Deletion | Chr2 | 17011154 | 17011163 | 9 | |
| Deletion | Chr2 | 17226748 | 17226749 | 1 | |
| Deletion | Chr8 | 17252082 | 17252086 | 4 | |
| Deletion | Chr5 | 21001255 | 21001256 | 1 | LOC_Os05g35370 |
| Deletion | Chr12 | 25222668 | 25222677 | 9 | |
| Deletion | Chr2 | 27389156 | 27389424 | 268 | |
| Deletion | Chr1 | 42889149 | 42889163 | 14 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 10627343 | 10627349 | 7 | |
| Insertion | Chr5 | 6125832 | 6125832 | 1 | |
| Insertion | Chr5 | 29937843 | 29937849 | 7 | |
| Insertion | Chr10 | 786991 | 787016 | 26 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 682154 | 845487 | 2 |
| Inversion | Chr4 | 709184 | 845555 | 2 |
| Inversion | Chr10 | 18590471 | 18590760 | LOC_Os10g34810 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 15982158 | Chr8 | 7146093 | 2 |
| Translocation | Chr12 | 24906902 | Chr5 | 4706810 | 2 |
| Translocation | Chr12 | 24906939 | Chr5 | 4703648 | LOC_Os12g40240 |
| Translocation | Chr11 | 24994223 | Chr4 | 17874111 | |
| Translocation | Chr3 | 29194570 | Chr1 | 31269208 |