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| Mutant Information |
|---|
| Mutant Name | FN4107-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4107-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13162610 | A-C | HET | ||
| SBS | Chr1 | 21271807 | C-T | HET | ||
| SBS | Chr10 | 16951514 | T-A | Homo | ||
| SBS | Chr10 | 9834055 | A-G | HET | ||
| SBS | Chr11 | 11155328 | C-T | Homo | ||
| SBS | Chr11 | 24190429 | C-T | Homo | ||
| SBS | Chr11 | 7587452 | G-A | Homo | ||
| SBS | Chr12 | 14324301 | A-T | HET | ||
| SBS | Chr12 | 22222869 | T-G | Homo | ||
| SBS | Chr12 | 24699307 | A-G | HET | ||
| SBS | Chr2 | 28685262 | A-C | HET | ||
| SBS | Chr2 | 2908215 | A-C | HET | ||
| SBS | Chr2 | 29270805 | T-C | HET | ||
| SBS | Chr2 | 7227441 | C-A | HET | ||
| SBS | Chr3 | 11677454 | G-T | HET | ||
| SBS | Chr3 | 2349082 | T-A | Homo | ||
| SBS | Chr3 | 31415916 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g55210 |
| SBS | Chr4 | 12924077 | T-G | HET | STOP_GAINED | LOC_Os04g22810 |
| SBS | Chr4 | 14905768 | G-C | HET | ||
| SBS | Chr4 | 8672612 | C-T | HET | ||
| SBS | Chr5 | 23497903 | C-G | Homo | ||
| SBS | Chr6 | 14083526 | A-C | Homo | ||
| SBS | Chr7 | 14492259 | A-T | HET | ||
| SBS | Chr7 | 17406340 | T-A | Homo | ||
| SBS | Chr7 | 3374062 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g06900 |
| SBS | Chr7 | 9796150 | C-A | HET | ||
| SBS | Chr8 | 12437652 | A-T | HET | ||
| SBS | Chr8 | 22280432 | A-C | HET | ||
| SBS | Chr8 | 27975549 | C-T | HET | ||
| SBS | Chr9 | 20809120 | C-T | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1648816 | 1648817 | 1 | |
| Deletion | Chr7 | 3736031 | 3736032 | 1 | |
| Deletion | Chr10 | 10198047 | 10198048 | 1 | LOC_Os10g20280 |
| Deletion | Chr3 | 13106943 | 13107034 | 91 | |
| Deletion | Chr9 | 15874431 | 15874432 | 1 | |
| Deletion | Chr8 | 17058106 | 17058156 | 50 | |
| Deletion | Chr9 | 17414001 | 17525000 | 110999 | 23 |
| Deletion | Chr10 | 19591247 | 19591248 | 1 | |
| Deletion | Chr11 | 22203968 | 22203970 | 2 | LOC_Os11g37620 |
| Deletion | Chr12 | 22248449 | 22248457 | 8 | |
| Deletion | Chr3 | 24846588 | 24846589 | 1 | LOC_Os03g44220 |
| Deletion | Chr6 | 29571001 | 29645000 | 73999 | 9 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 17136640 | 17136641 | 2 | |
| Insertion | Chr4 | 15002505 | 15002505 | 1 | |
| Insertion | Chr4 | 1559843 | 1559846 | 4 | |
| Insertion | Chr4 | 4825104 | 4825104 | 1 | |
| Insertion | Chr4 | 7452431 | 7452431 | 1 | |
| Insertion | Chr5 | 24735972 | 24735977 | 6 | |
| Insertion | Chr6 | 29088210 | 29088212 | 3 | LOC_Os06g48070 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 32294353 | 32780081 | LOC_Os03g57490 |
| Inversion | Chr3 | 32294381 | 32780089 | LOC_Os03g57490 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 696949 | Chr11 | 652740 | LOC_Os12g02240 |
| Translocation | Chr4 | 4806857 | Chr3 | 18327007 | LOC_Os03g32050 |
| Translocation | Chr7 | 5461187 | Chr2 | 683819 | LOC_Os02g02210 |
| Translocation | Chr11 | 9511062 | Chr3 | 21207018 | LOC_Os03g38190 |
| Translocation | Chr11 | 13135806 | Chr3 | 23196324 | 2 |
| Translocation | Chr11 | 15950035 | Chr1 | 14847997 |