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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2883793	G-A	HET
SBS	Chr1	8826827	G-A	HET	STOP_GAINED	LOC_Os01g15690
SBS	Chr10	10733755	A-T	HET
SBS	Chr10	17555059	C-T	HET
SBS	Chr12	4224622	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g08300
SBS	Chr12	5290487	G-T	Homo
SBS	Chr2	25992051	A-C	Homo
SBS	Chr2	3434899	G-T	HET
SBS	Chr3	16744731	G-A	HET
SBS	Chr3	19763329	G-A	HET
SBS	Chr4	10603648	G-A	Homo
SBS	Chr4	15334675	G-A	HET
SBS	Chr4	17237915	A-G	HET
SBS	Chr4	22818165	C-T	HET
SBS	Chr4	24113315	T-C	HET
SBS	Chr4	27075917	G-T	HET
SBS	Chr5	11112201	G-T	HET
SBS	Chr5	14104797	G-A	Homo
SBS	Chr5	1533410	C-T	Homo
SBS	Chr5	28410625	C-T	HET
SBS	Chr6	12202522	G-A	HET
SBS	Chr6	21863538	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g37040
SBS	Chr6	22535137	C-T	HET
SBS	Chr6	2798807	G-A	HET
SBS	Chr6	30185542	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49860
SBS	Chr6	30186048	C-G	HET
SBS	Chr6	30186049	C-A	HET
SBS	Chr6	6181979	C-G	Homo
SBS	Chr7	14406271	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g25210
SBS	Chr7	18289283	C-A	HET
SBS	Chr7	18512732	G-A	HET
SBS	Chr7	8369214	T-A	Homo
SBS	Chr8	5264734	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g09080
SBS	Chr9	1601570	G-A	HET
SBS	Chr9	9290169	T-C	HET

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1218759	1218762	3
Deletion	Chr2	2706071	2706072	1	LOC_Os02g05570
Deletion	Chr12	3992727	3992731	4
Deletion	Chr12	5290711	5290736	25
Deletion	Chr1	9868752	9868775	23
Deletion	Chr12	12588997	12589002	5
Deletion	Chr6	24984614	24984633	19
Deletion	Chr6	25369458	25369459	1
Deletion	Chr4	26418614	26418615	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	1476412	1476413	2
Insertion	Chr2	16230649	16230649	1
Insertion	Chr5	12714867	12714867	1
Insertion	Chr6	4802	4802	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	22979085	23387961	2
Inversion	Chr5	22979097	23388656	2
Inversion	Chr4	23179461	23317613	2
Inversion	Chr4	23179469	23317620	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	239587	Chr7	15104054	2
Translocation	Chr12	9132411	Chr11	3126762	2
Translocation	Chr6	9979238	Chr4	1179008	LOC_Os06g17230
Translocation	Chr12	15647896	Chr10	11437864
Translocation	Chr11	19931472	Chr4	16892855
Translocation	Chr12	20331815	Chr8	17926417	2
Translocation	Chr9	22466236	Chr4	30123635	LOC_Os09g39140
Translocation	Chr9	22466245	Chr4	30124995	LOC_Os09g39140
Translocation	Chr6	23398482	Chr3	22535157
Translocation	Chr4	25990483	Chr2	26794030	LOC_Os04g43880

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