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| Mutant Information |
|---|
| Mutant Name | FN411-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN411-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32747160 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 39443450 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 14577077 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 9526788 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 10767908 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 10913009 | T-G | HOMO | INTRON | |
| SBS | Chr11 | 20518574 | A-T | HOMO | UTR_3_PRIME | |
| SBS | Chr11 | 21404841 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 25323815 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g42070 |
| SBS | Chr11 | 3924411 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 25975135 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g41900 |
| SBS | Chr2 | 15356884 | T-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 18557005 | A-C | HET | INTERGENIC | |
| SBS | Chr3 | 16799237 | C-A | HET | UTR_3_PRIME | |
| SBS | Chr3 | 19996278 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 20863105 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 35493177 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 6852128 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 185060 | A-G | HOMO | INTERGENIC | |
| SBS | Chr5 | 7386439 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 5661656 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 13192312 | T-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 13192345 | A-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 16120946 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 22060682 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 28421356 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 4358116 | G-C | HET | INTERGENIC | |
| SBS | Chr7 | 701701 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 701702 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 701722 | A-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 13026774 | T-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 13160922 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 13976685 | C-G | HET | INTERGENIC | |
| SBS | Chr9 | 11109877 | A-C | HET | INTERGENIC | |
| SBS | Chr9 | 18664379 | G-C | HOMO | INTRON | |
| SBS | Chr9 | 18664380 | C-A | HOMO | INTRON | |
| SBS | Chr9 | 4346644 | C-G | HET | INTERGENIC | |
| SBS | Chr9 | 7795898 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 8030448 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 8593234 | G-A | HET | INTERGENIC |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 1742740 | 1742741 | 1 | |
| Deletion | Chr5 | 3688400 | 3688401 | 1 | |
| Deletion | Chr8 | 4203002 | 4203011 | 9 | |
| Deletion | Chr3 | 8914674 | 8914678 | 4 | |
| Deletion | Chr8 | 10976677 | 10976683 | 6 | |
| Deletion | Chr1 | 16666206 | 16666208 | 2 | LOC_Os01g29750 |
| Deletion | Chr3 | 16779141 | 16779151 | 10 | LOC_Os03g29440 |
| Deletion | Chr3 | 17402890 | 17402899 | 9 | |
| Deletion | Chr4 | 26751968 | 26751969 | 1 | |
| Deletion | Chr8 | 27577038 | 27577043 | 5 | LOC_Os08g43600 |
| Deletion | Chr6 | 30084225 | 30084226 | 1 | |
| Deletion | Chr4 | 30831199 | 30831200 | 1 | |
| Deletion | Chr1 | 36008639 | 36008649 | 10 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 24505789 | 24505790 | 2 | |
| Insertion | Chr11 | 20135357 | 20135357 | 1 | |
| Insertion | Chr11 | 28660277 | 28660278 | 2 | |
| Insertion | Chr12 | 21294078 | 21294078 | 1 | LOC_Os12g34990 |
| Insertion | Chr3 | 24166383 | 24166383 | 1 | |
| Insertion | Chr5 | 5951491 | 5951494 | 4 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 14361282 | Chr4 | 28000676 | |
| Translocation | Chr5 | 17111326 | Chr4 | 3056165 | 2 |