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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21420712	A-C	HET
SBS	Chr1	25765555	C-T	Homo
SBS	Chr1	36783561	C-T	Homo
SBS	Chr1	36783562	G-T	Homo
SBS	Chr2	27233611	C-T	HET
SBS	Chr3	31724351	A-T	HET
SBS	Chr4	4579776	G-A	HET
SBS	Chr4	6719812	C-T	HET
SBS	Chr4	22987748	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g38700
SBS	Chr4	24522613	G-T	HET
SBS	Chr4	27398363	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g46240
SBS	Chr4	33260253	T-A	HET
SBS	Chr4	35076005	C-T	HET
SBS	Chr4	35383937	T-A	HET
SBS	Chr6	1107683	G-A	Homo
SBS	Chr6	7126310	G-A	HET
SBS	Chr6	10947539	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g19240
SBS	Chr6	17364138	G-A	Homo
SBS	Chr6	27992166	A-C	Homo
SBS	Chr7	19601173	C-T	HET
SBS	Chr8	6685630	T-C	Homo
SBS	Chr8	16358165	C-T	HET
SBS	Chr8	27633818	T-A	HET
SBS	Chr9	2893000	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g06170
SBS	Chr10	14344588	C-T	HET
SBS	Chr11	13423572	T-C	HET
SBS	Chr11	27705138	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g45790
SBS	Chr12	1175337	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g03100
SBS	Chr12	2230479	A-T	HET
SBS	Chr12	3995526	A-G	Homo
SBS	Chr12	19221222	C-A	Homo
SBS	Chr12	20243635	G-T	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	784713	784715	2
Deletion	Chr7	4786001	4932000	145999	16
Deletion	Chr6	10938429	10938431	2
Deletion	Chr6	12043142	12043148	6
Deletion	Chr10	13049586	13049587	1
Deletion	Chr12	13554059	13554065	6
Deletion	Chr12	14815078	14815079	1
Deletion	Chr12	16337749	16337761	12	LOC_Os12g27710
Deletion	Chr7	20025703	20025704	1	LOC_Os07g33500
Deletion	Chr8	22234586	22234591	5
Deletion	Chr8	23822177	23822191	14
Deletion	Chr2	23830009	23830011	2
Deletion	Chr3	25216177	25216181	4
Deletion	Chr1	26275051	26275078	27
Deletion	Chr1	26436842	26436843	1
Deletion	Chr1	27167560	27167583	23
Deletion	Chr1	27250074	27250075	1
Deletion	Chr1	28181762	28181773	11
Deletion	Chr1	36757594	36757604	10

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	4173653	4173656	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	21721173	22313456	LOC_Os01g38670
Inversion	Chr1	21721177	22313464	LOC_Os01g38670

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2166903	Chr3	34630141	LOC_Os12g04990
Translocation	Chr12	2166905	Chr3	34629614	LOC_Os12g04990
Translocation	Chr7	4521145	Chr1	37730883	LOC_Os01g64990
Translocation	Chr7	4936894	Chr1	27686533	LOC_Os07g09370
Translocation	Chr11	10799195	Chr4	6837852	LOC_Os04g12390
Translocation	Chr5	16961975	Chr2	2674024
Translocation	Chr11	23286594	Chr1	41587084
Translocation	Chr8	23485533	Chr3	837952
Translocation	Chr8	23485534	Chr3	797301	LOC_Os03g02310

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