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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29160244	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g50760
SBS	Chr1	29160245	A-T	Homo
SBS	Chr1	33036573	G-A	HET
SBS	Chr1	43048045	G-A	HET
SBS	Chr10	13901945	C-A	HET
SBS	Chr10	16760269	G-A	Homo
SBS	Chr10	2149198	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g04530
SBS	Chr11	19034996	A-T	HET
SBS	Chr11	5391184	T-A	HET
SBS	Chr12	21804016	G-A	HET
SBS	Chr12	24713650	C-A	HET
SBS	Chr12	368680	C-G	HET
SBS	Chr12	5808305	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g10800
SBS	Chr3	13439272	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23220
SBS	Chr3	20467536	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36890
SBS	Chr3	30286682	C-T	Homo
SBS	Chr4	33741820	G-A	HET
SBS	Chr4	35346294	C-T	Homo
SBS	Chr4	35460721	T-C	Homo
SBS	Chr4	643790	A-T	HET
SBS	Chr5	5062678	T-G	HET
SBS	Chr6	27074693	G-T	HET
SBS	Chr7	11000119	C-A	HET
SBS	Chr7	16904325	C-T	Homo
SBS	Chr7	20912311	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g34890
SBS	Chr7	22599846	G-A	HET
SBS	Chr7	27501365	T-C	HET
SBS	Chr8	12024379	G-C	HET
SBS	Chr8	21750557	C-T	Homo
SBS	Chr8	2245564	A-G	HET
SBS	Chr9	10203026	G-A	HET
SBS	Chr9	14941671	G-A	HET
SBS	Chr9	15582297	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g25945

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2119390	2119391	1
Deletion	Chr1	2639069	2639317	248
Deletion	Chr8	3859022	3859035	13
Deletion	Chr7	4226611	4226617	6
Deletion	Chr7	4565801	4565811	10
Deletion	Chr5	5232158	5232169	11
Deletion	Chr5	5605780	5605789	9
Deletion	Chr3	5756551	5756557	6
Deletion	Chr2	7560675	7560687	12	LOC_Os02g13910
Deletion	Chr7	7710822	7710823	1
Deletion	Chr9	9033708	9033711	3	LOC_Os09g15000
Deletion	Chr5	9287519	9287520	1
Deletion	Chr5	10922063	10922068	5
Deletion	Chr5	12336130	12336132	2
Deletion	Chr7	12801767	12801771	4
Deletion	Chr10	15277844	15277851	7
Deletion	Chr10	15533065	15533074	9
Deletion	Chr5	17488260	17488261	1
Deletion	Chr10	18331952	18331959	7
Deletion	Chr6	20018728	20018737	9
Deletion	Chr4	25108393	25108394	1
Deletion	Chr8	25979334	25979341	7
Deletion	Chr8	25987251	25987253	2
Deletion	Chr8	26000906	26000923	17	LOC_Os08g41160
Deletion	Chr5	26153680	26153681	1	LOC_Os05g44990
Deletion	Chr4	26559480	26559522	42
Deletion	Chr1	27010202	27010214	12
Deletion	Chr7	27017001	27032000	14999	3
Deletion	Chr6	29804227	29804233	6
Deletion	Chr3	31283663	31283685	22	LOC_Os03g55010
Deletion	Chr1	38493971	38493976	5	LOC_Os01g66280

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	3105927	3105928	2
Insertion	Chr3	11279349	11279412	64
Insertion	Chr5	10837772	10837773	2
Insertion	Chr5	28883876	28883877	2
Insertion	Chr8	27234434	27234517	84

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4082339	4082702	LOC_Os06g08380
Inversion	Chr8	5582929	5948786	LOC_Os08g10244
Inversion	Chr8	5582935	5753065	LOC_Os08g09950
Inversion	Chr10	11922292	11922458
Inversion	Chr10	21569605	22382694	LOC_Os10g40260
Inversion	Chr10	21569616	22382695	2
Inversion	Chr4	23762764	23763013	LOC_Os04g39900
Inversion	Chr11	24120663	24121117	LOC_Os11g40450
Inversion	Chr4	30932193	30932639	LOC_Os04g52074

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	21569616	Chr5	22985125	2
Translocation	Chr10	22382696	Chr5	22984958	LOC_Os05g39200

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