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| Mutant Information |
|---|
| Mutant Name | FN4112-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4112-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10818591 | A-T | HET | ||
| SBS | Chr1 | 20052176 | G-A | HET | ||
| SBS | Chr1 | 2879274 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g06020 |
| SBS | Chr1 | 42948537 | G-A | HET | ||
| SBS | Chr10 | 10203562 | A-G | HET | ||
| SBS | Chr11 | 15649655 | C-T | HET | ||
| SBS | Chr12 | 12658303 | C-T | HET | ||
| SBS | Chr2 | 20600670 | A-G | Homo | ||
| SBS | Chr3 | 31989676 | T-A | Homo | ||
| SBS | Chr3 | 35755483 | G-A | Homo | ||
| SBS | Chr4 | 17354142 | A-T | HET | ||
| SBS | Chr4 | 18293384 | C-T | Homo | ||
| SBS | Chr4 | 19592415 | A-G | Homo | ||
| SBS | Chr4 | 26441920 | T-A | HET | ||
| SBS | Chr4 | 34001066 | A-T | HET | ||
| SBS | Chr4 | 34001067 | C-T | HET | ||
| SBS | Chr5 | 1238892 | T-G | HET | ||
| SBS | Chr6 | 11201064 | G-T | HET | ||
| SBS | Chr6 | 18090301 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g31120 |
| SBS | Chr6 | 26794371 | T-A | Homo | ||
| SBS | Chr6 | 9228324 | G-A | HET | ||
| SBS | Chr7 | 1225708 | G-A | Homo | ||
| SBS | Chr7 | 28697581 | C-T | HET | ||
| SBS | Chr8 | 6175025 | G-A | HET | ||
| SBS | Chr9 | 15717959 | T-C | HET | ||
| SBS | Chr9 | 2663275 | C-T | HET | ||
| SBS | Chr9 | 5290767 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g09770 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 724599 | 724600 | 1 | |
| Deletion | Chr5 | 2878860 | 2878863 | 3 | LOC_Os05g05780 |
| Deletion | Chr2 | 5946012 | 5946013 | 1 | |
| Deletion | Chr11 | 8745426 | 8745427 | 1 | |
| Deletion | Chr7 | 11797026 | 11797037 | 11 | LOC_Os07g20430 |
| Deletion | Chr10 | 15562224 | 15562236 | 12 | LOC_Os10g29980 |
| Deletion | Chr2 | 16222213 | 16222224 | 11 | |
| Deletion | Chr4 | 20041580 | 20041595 | 15 | |
| Deletion | Chr1 | 29050252 | 29050262 | 10 | |
| Deletion | Chr3 | 35147548 | 35147560 | 12 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 13554582 | 13554582 | 1 | |
| Insertion | Chr4 | 8996999 | 8996999 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 2606806 | 3568098 | LOC_Os05g06814 |
| Inversion | Chr5 | 2606816 | 3568101 | LOC_Os05g06814 |
| Inversion | Chr10 | 10676006 | 11243724 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 13795124 | Chr5 | 28810789 | |
| Translocation | Chr9 | 18996849 | Chr4 | 19818331 | LOC_Os09g31490 |
| Translocation | Chr5 | 19291806 | Chr2 | 17063945 | |
| Translocation | Chr11 | 26285176 | Chr2 | 10494488 | 2 |
| Translocation | Chr12 | 27067125 | Chr7 | 4745392 | |
| Translocation | Chr7 | 28216500 | Chr4 | 17793219 | LOC_Os07g47201 |
| Translocation | Chr2 | 33566007 | Chr1 | 18542307 |