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| Mutant Information |
|---|
| Mutant Name | FN4113-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4113-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1220102 | A-G | Homo | ||
| SBS | Chr1 | 14196675 | G-A | HET | ||
| SBS | Chr1 | 31371184 | G-A | HET | ||
| SBS | Chr1 | 4364674 | C-T | Homo | ||
| SBS | Chr11 | 10616650 | A-G | HET | ||
| SBS | Chr11 | 15180057 | G-A | Homo | ||
| SBS | Chr11 | 20997633 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g35762 |
| SBS | Chr11 | 3742508 | G-T | Homo | ||
| SBS | Chr12 | 17312032 | G-A | Homo | ||
| SBS | Chr2 | 23796952 | G-A | Homo | ||
| SBS | Chr2 | 6963579 | C-A | HET | ||
| SBS | Chr3 | 17027365 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g29880 |
| SBS | Chr3 | 31386275 | A-T | HET | ||
| SBS | Chr4 | 26276058 | A-C | Homo | ||
| SBS | Chr4 | 35355303 | T-C | HET | ||
| SBS | Chr5 | 17465466 | A-G | Homo | ||
| SBS | Chr5 | 5796148 | A-T | Homo | ||
| SBS | Chr6 | 10451712 | C-T | HET | ||
| SBS | Chr6 | 11749195 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g20460 |
| SBS | Chr6 | 22115708 | C-T | HET | ||
| SBS | Chr6 | 2421030 | C-T | HET | ||
| SBS | Chr6 | 5495499 | C-T | HET | ||
| SBS | Chr7 | 24197834 | T-A | HET | ||
| SBS | Chr7 | 3691327 | C-G | HET | ||
| SBS | Chr8 | 11539917 | C-A | Homo |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 367803 | 367807 | 4 | |
| Deletion | Chr5 | 1839588 | 1839590 | 2 | |
| Deletion | Chr5 | 2760937 | 2760941 | 4 | |
| Deletion | Chr6 | 6310604 | 6310605 | 1 | |
| Deletion | Chr1 | 7251156 | 7251157 | 1 | LOC_Os01g13030 |
| Deletion | Chr12 | 7663749 | 7663752 | 3 | |
| Deletion | Chr2 | 8138778 | 8138781 | 3 | LOC_Os02g14730 |
| Deletion | Chr1 | 9842732 | 9842736 | 4 | LOC_Os01g17120 |
| Deletion | Chr6 | 13372479 | 13372511 | 32 | LOC_Os06g22900 |
| Deletion | Chr5 | 14286984 | 14286989 | 5 | LOC_Os05g24680 |
| Deletion | Chr3 | 18723300 | 18723305 | 5 | |
| Deletion | Chr7 | 21538605 | 21538612 | 7 | |
| Deletion | Chr11 | 22248971 | 22248977 | 6 | |
| Deletion | Chr3 | 22883415 | 22883419 | 4 | |
| Deletion | Chr3 | 23425294 | 23425307 | 13 | |
| Deletion | Chr8 | 24117508 | 24117512 | 4 | LOC_Os08g38070 |
| Deletion | Chr4 | 24767919 | 24767925 | 6 | LOC_Os04g41810 |
| Deletion | Chr12 | 26095567 | 26095568 | 1 | |
| Deletion | Chr2 | 27940812 | 27940815 | 3 | |
| Deletion | Chr4 | 28443495 | 28443514 | 19 | |
| Deletion | Chr4 | 31155001 | 31176000 | 20999 | LOC_Os04g52440 |
Insertions: 7
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 38024531 | 38091849 | LOC_Os01g65610 |
No Translocation