Search Results
| Mutant Information |
|---|
| Mutant Name | FN4114-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4114-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8604426 | C-T | HET | ||
| SBS | Chr1 | 16156299 | A-G | Homo | ||
| SBS | Chr1 | 24331002 | T-A | Homo | ||
| SBS | Chr1 | 24331008 | A-T | Homo | ||
| SBS | Chr1 | 29824040 | G-A | Homo | ||
| SBS | Chr1 | 30711493 | C-T | Homo | ||
| SBS | Chr1 | 37327624 | A-G | HET | ||
| SBS | Chr2 | 10845189 | C-T | HET | ||
| SBS | Chr3 | 14223187 | G-A | HET | ||
| SBS | Chr4 | 3448741 | G-A | Homo | ||
| SBS | Chr4 | 6220426 | A-G | Homo | ||
| SBS | Chr4 | 6624973 | G-A | HET | ||
| SBS | Chr4 | 23692284 | C-T | HET | ||
| SBS | Chr4 | 29000725 | T-C | HET | ||
| SBS | Chr5 | 2004108 | C-T | Homo | ||
| SBS | Chr5 | 3516430 | C-T | HET | ||
| SBS | Chr5 | 24257827 | T-C | HET | ||
| SBS | Chr5 | 25007397 | T-A | HET | ||
| SBS | Chr6 | 25741428 | C-T | Homo | ||
| SBS | Chr6 | 25993966 | C-T | HET | ||
| SBS | Chr7 | 871754 | G-A | HET | ||
| SBS | Chr7 | 6633630 | G-A | HET | ||
| SBS | Chr8 | 6948491 | G-A | HET | ||
| SBS | Chr8 | 10157667 | T-C | HET | ||
| SBS | Chr8 | 17952391 | G-A | HET | ||
| SBS | Chr9 | 1715492 | C-T | HET | ||
| SBS | Chr9 | 16788919 | A-G | HET | ||
| SBS | Chr10 | 285422 | G-A | Homo | ||
| SBS | Chr11 | 5145770 | C-A | HET | ||
| SBS | Chr11 | 8430313 | G-A | HET | ||
| SBS | Chr11 | 8616727 | G-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 2224447 | 2224451 | 4 | LOC_Os02g04820 |
| Deletion | Chr12 | 4069001 | 4128000 | 58999 | 12 |
| Deletion | Chr12 | 4142001 | 4228000 | 85999 | 18 |
| Deletion | Chr12 | 4234001 | 4367000 | 132999 | 25 |
| Deletion | Chr6 | 5818642 | 5818643 | 1 | |
| Deletion | Chr8 | 9535159 | 9535161 | 2 | |
| Deletion | Chr7 | 12260562 | 12260563 | 1 | |
| Deletion | Chr2 | 29380944 | 29380950 | 6 | |
| Deletion | Chr2 | 30706712 | 30706713 | 1 | |
| Deletion | Chr1 | 38148772 | 38148777 | 5 | LOC_Os01g65700 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 4839595 | 4839627 | 33 | |
| Insertion | Chr7 | 24530941 | 24530941 | 1 | |
| Insertion | Chr9 | 18478348 | 18478348 | 1 | |
| Insertion | Chr11 | 21228561 | 21228561 | 1 |
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 3954792 | Chr3 | 1385066 | LOC_Os03g03240 |
| Translocation | Chr12 | 9754251 | Chr10 | 8039778 | |
| Translocation | Chr11 | 10813032 | Chr3 | 33421420 | LOC_Os11g18970 |
| Translocation | Chr8 | 14996783 | Chr1 | 41858429 | |
| Translocation | Chr7 | 22771291 | Chr6 | 14580538 | |
| Translocation | Chr11 | 25739400 | Chr1 | 41115482 | |
| Translocation | Chr8 | 27473648 | Chr1 | 3092966 | LOC_Os08g43430 |