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| Mutant Information |
|---|
| Mutant Name | FN4117-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4117-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 29935841 | T-C | HET | ||
| SBS | Chr1 | 30432103 | G-A | Homo | ||
| SBS | Chr1 | 3689172 | G-T | HET | ||
| SBS | Chr1 | 7352204 | A-C | HET | ||
| SBS | Chr11 | 9363747 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g16870 |
| SBS | Chr12 | 14245717 | C-A | HET | ||
| SBS | Chr12 | 16848498 | C-A | Homo | ||
| SBS | Chr12 | 26205187 | G-T | HET | ||
| SBS | Chr12 | 3264488 | T-C | HET | ||
| SBS | Chr2 | 20806621 | C-T | Homo | ||
| SBS | Chr2 | 4020400 | C-T | Homo | ||
| SBS | Chr3 | 22534334 | G-T | HET | ||
| SBS | Chr3 | 30324618 | A-C | HET | ||
| SBS | Chr3 | 3664455 | A-T | Homo | ||
| SBS | Chr4 | 35225182 | C-T | Homo | ||
| SBS | Chr5 | 4435628 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g08140 |
| SBS | Chr5 | 5147933 | G-C | Homo | ||
| SBS | Chr5 | 6101006 | T-C | Homo | ||
| SBS | Chr6 | 10598656 | G-T | HET | ||
| SBS | Chr6 | 17541483 | C-T | Homo | ||
| SBS | Chr6 | 20102273 | C-T | Homo | ||
| SBS | Chr6 | 25334967 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g42200 |
| SBS | Chr6 | 27984069 | C-T | HET | ||
| SBS | Chr6 | 9638056 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g16710 |
| SBS | Chr7 | 11889117 | C-T | Homo | ||
| SBS | Chr7 | 29127917 | C-T | Homo | ||
| SBS | Chr7 | 9612538 | A-T | Homo | ||
| SBS | Chr8 | 14500603 | G-T | Homo | ||
| SBS | Chr8 | 20889076 | A-G | HET | ||
| SBS | Chr9 | 11839845 | G-A | Homo | ||
| SBS | Chr9 | 13005498 | T-G | Homo | ||
| SBS | Chr9 | 6997817 | G-A | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 6188437 | 6188445 | 8 | LOC_Os07g11240 |
| Deletion | Chr3 | 6936680 | 6936690 | 10 | |
| Deletion | Chr3 | 11287785 | 11287793 | 8 | |
| Deletion | Chr6 | 19837161 | 19837162 | 1 | |
| Deletion | Chr6 | 20772354 | 20772365 | 11 | |
| Deletion | Chr6 | 21673349 | 21673350 | 1 | |
| Deletion | Chr12 | 24331808 | 24331928 | 120 | |
| Deletion | Chr2 | 34509359 | 34509361 | 2 | |
| Deletion | Chr3 | 36166101 | 36166117 | 16 | LOC_Os03g63990 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 34047786 | 34047786 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 13723886 | 13724292 | LOC_Os06g23530 |
Translocations: 17
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 6773253 | Chr8 | 16806392 | LOC_Os08g27570 |
| Translocation | Chr10 | 9694958 | Chr3 | 16766814 | |
| Translocation | Chr10 | 11150784 | Chr7 | 1494633 | |
| Translocation | Chr7 | 13236653 | Chr5 | 9247535 | LOC_Os07g23440 |
| Translocation | Chr12 | 15959964 | Chr11 | 9454588 | LOC_Os12g27190 |
| Translocation | Chr4 | 15987390 | Chr1 | 22333953 | LOC_Os04g27020 |
| Translocation | Chr4 | 15987826 | Chr1 | 22333950 | LOC_Os04g27020 |
| Translocation | Chr12 | 17220098 | Chr7 | 18137538 | 2 |
| Translocation | Chr11 | 17928209 | Chr6 | 23321378 | |
| Translocation | Chr10 | 18298969 | Chr7 | 23456054 | LOC_Os10g34310 |
| Translocation | Chr12 | 18515094 | Chr10 | 14497223 | LOC_Os12g30824 |
| Translocation | Chr3 | 25877247 | Chr1 | 33032348 | |
| Translocation | Chr12 | 26092470 | Chr1 | 17722024 | |
| Translocation | Chr4 | 26656868 | Chr3 | 16448151 | |
| Translocation | Chr12 | 27317483 | Chr11 | 15082124 | |
| Translocation | Chr11 | 28172411 | Chr7 | 9845941 | LOC_Os11g46890 |
| Translocation | Chr4 | 31439082 | Chr3 | 23957195 |