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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1950405	C-T	Homo
SBS	Chr1	8494936	C-T	HET
SBS	Chr1	8494937	A-T	HET
SBS	Chr1	9564805	T-A	HET
SBS	Chr1	9564806	G-A	HET
SBS	Chr1	10681028	A-T	HET
SBS	Chr2	10102168	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g17550
SBS	Chr2	11725317	T-C	HET
SBS	Chr2	24918892	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g41550
SBS	Chr2	28894951	C-T	Homo
SBS	Chr3	10039658	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g18030
SBS	Chr4	23297364	A-T	Homo
SBS	Chr5	12138773	C-T	HET
SBS	Chr5	27889246	T-C	HET
SBS	Chr5	29765779	C-T	HET
SBS	Chr7	7007479	G-T	HET
SBS	Chr7	7007480	A-T	HET
SBS	Chr7	28887090	T-A	Homo
SBS	Chr7	29512333	T-C	Homo
SBS	Chr8	18556674	G-A	Homo
SBS	Chr9	21023774	C-A	Homo
SBS	Chr10	17053760	C-T	Homo
SBS	Chr10	19418877	C-T	Homo
SBS	Chr11	18929270	G-T	HET
SBS	Chr11	18932854	T-A	HET
SBS	Chr11	18984778	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g32160
SBS	Chr11	23081026	T-C	HET
SBS	Chr11	26512735	C-T	HET
SBS	Chr12	15357050	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g26310
SBS	Chr12	18911197	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g31440
SBS	Chr12	25738658	T-C	Homo

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	19173473	19173475	2
Deletion	Chr12	21273925	21273938	13	LOC_Os12g34950
Deletion	Chr12	22805612	22805646	34
Deletion	Chr11	24701001	24739000	37999	6
Deletion	Chr11	24751001	24827000	75999	8
Deletion	Chr3	25930703	25930714	11
Deletion	Chr8	28320548	28320549	1
Deletion	Chr2	28634162	28634164	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	888242	888243	2
Insertion	Chr3	18120103	18120103	1
Insertion	Chr8	8901349	8901350	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6348439	6712402	LOC_Os10g11454
Inversion	Chr10	6348446	6712407	LOC_Os10g11454
Inversion	Chr10	12351041	12355090	LOC_Os10g24100
Inversion	Chr10	12351051	12355098	LOC_Os10g24100

Translocations: 15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4379988	Chr4	3899492	2
Translocation	Chr8	6075106	Chr5	8208594	2
Translocation	Chr3	8412205	Chr1	17229629	LOC_Os03g15370
Translocation	Chr8	9521948	Chr5	9255649
Translocation	Chr11	9764802	Chr3	24004209	LOC_Os11g17520
Translocation	Chr8	12014005	Chr3	23147205	2
Translocation	Chr5	13135877	Chr4	11855959
Translocation	Chr6	16040202	Chr4	11855994
Translocation	Chr8	16921182	Chr4	12564762
Translocation	Chr12	18527113	Chr11	14827070	2
Translocation	Chr7	20170939	Chr6	5157867
Translocation	Chr6	23210909	Chr5	15012793	LOC_Os06g39090
Translocation	Chr11	25014308	Chr10	7594521	LOC_Os10g13970
Translocation	Chr11	25036016	Chr10	7594514	LOC_Os10g13970
Translocation	Chr11	27691407	Chr6	20313843	LOC_Os11g45750

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