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| Mutant Information |
|---|
| Mutant Name | FN4120-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4120-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7892882 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g14090 |
| SBS | Chr10 | 6996394 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g12570 |
| SBS | Chr10 | 9203837 | G-A | HET | ||
| SBS | Chr11 | 11722166 | G-A | HET | ||
| SBS | Chr11 | 13160817 | C-T | HET | ||
| SBS | Chr11 | 24802903 | A-G | Homo | ||
| SBS | Chr11 | 26784524 | G-C | HET | ||
| SBS | Chr11 | 8057570 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g14350 |
| SBS | Chr11 | 9762389 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g17520 |
| SBS | Chr2 | 12706418 | A-T | HET | ||
| SBS | Chr2 | 12746398 | G-A | HET | ||
| SBS | Chr2 | 32277291 | A-T | Homo | ||
| SBS | Chr3 | 11065256 | G-T | HET | ||
| SBS | Chr3 | 15182782 | C-T | HET | ||
| SBS | Chr3 | 20091381 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g36220 |
| SBS | Chr3 | 29617575 | T-C | HET | ||
| SBS | Chr4 | 13696780 | C-T | Homo | ||
| SBS | Chr4 | 2742274 | A-T | Homo | ||
| SBS | Chr4 | 2742276 | G-T | Homo | ||
| SBS | Chr6 | 10112667 | C-T | Homo | ||
| SBS | Chr6 | 20444498 | T-C | HET | ||
| SBS | Chr7 | 20941474 | T-A | HET | ||
| SBS | Chr7 | 21301408 | C-A | HET | ||
| SBS | Chr8 | 5194750 | G-A | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 178769 | 178778 | 9 | |
| Deletion | Chr2 | 9110403 | 9110407 | 4 | |
| Deletion | Chr3 | 9482830 | 9482842 | 12 | LOC_Os03g17050 |
| Deletion | Chr12 | 10113001 | 10150000 | 36999 | 6 |
| Deletion | Chr6 | 12474621 | 12474624 | 3 | |
| Deletion | Chr9 | 12815640 | 12815653 | 13 | |
| Deletion | Chr10 | 16498001 | 16690000 | 191999 | 32 |
| Deletion | Chr5 | 18444830 | 18444836 | 6 | |
| Deletion | Chr12 | 19215001 | 19233000 | 17999 | LOC_Os12g31910 |
| Deletion | Chr12 | 19238001 | 19302000 | 63999 | 7 |
| Deletion | Chr3 | 23788184 | 23788190 | 6 | |
| Deletion | Chr1 | 26876001 | 26913000 | 36999 | 4 |
| Deletion | Chr5 | 28900480 | 28900481 | 1 | |
| Deletion | Chr1 | 30437436 | 30437441 | 5 | |
| Deletion | Chr2 | 31475485 | 31475492 | 7 | LOC_Os02g51400 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 25149136 | 25149136 | 1 | |
| Insertion | Chr3 | 11236907 | 11237057 | 151 | |
| Insertion | Chr6 | 21635685 | 21635817 | 133 | |
| Insertion | Chr8 | 12440724 | 12440724 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 5943368 | 5943524 | |
| Inversion | Chr12 | 19500602 | 19501019 | LOC_Os12g32300 |
| Inversion | Chr2 | 23965449 | 24522807 | LOC_Os02g40450 |
| Inversion | Chr2 | 23965458 | 24522810 | LOC_Os02g40450 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 2785627 | Chr3 | 16685673 | |
| Translocation | Chr7 | 18010760 | Chr4 | 13780016 | LOC_Os04g24120 |
| Translocation | Chr12 | 19302513 | Chr11 | 13576614 |