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Mutant Information

Mutant Name	FN4121-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4121-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26294570	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g46230
SBS	Chr1	29145248	C-T	HET
SBS	Chr2	294985	A-T	Homo
SBS	Chr2	9673536	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g16960
SBS	Chr4	3560657	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g06770
SBS	Chr5	18633453	G-A	HET
SBS	Chr7	5490354	C-T	Homo
SBS	Chr7	16601236	C-G	HET
SBS	Chr8	10419240	C-A	Homo
SBS	Chr8	12864007	T-A	Homo
SBS	Chr9	12662432	A-T	HET
SBS	Chr9	12775471	C-A	Homo
SBS	Chr11	11700655	T-A	Homo
SBS	Chr11	23814776	T-G	Homo
SBS	Chr12	17150930	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28990
SBS	Chr12	25436571	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g41080
SBS	Chr12	26332686	G-T	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1201081	1201083	2
Deletion	Chr8	3305338	3305342	4
Deletion	Chr10	4769810	4769811	1	LOC_Os10g08820
Deletion	Chr11	14292208	14292219	11
Deletion	Chr6	14864454	14864461	7
Deletion	Chr11	19994843	19994849	6	LOC_Os11g34150
Deletion	Chr7	24404136	24404138	2
Deletion	Chr5	24621669	24621670	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	29923728	29923728	1
Insertion	Chr4	4025001	4025001	1
Insertion	Chr7	28608628	28608628	1
Insertion	Chr8	16899775	16899809	35
Insertion	Chr8	23317908	23317911	4
Insertion	Chr9	19341084	19341084	1
Insertion	Chr10	5026126	5026127	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	13577852	Chr3	10613117