Search Results
| Mutant Information |
|---|
| Mutant Name | FN4122-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4122-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7998924 | G-C | HET | ||
| SBS | Chr1 | 17670406 | C-T | Homo | ||
| SBS | Chr1 | 21023128 | A-G | Homo | ||
| SBS | Chr1 | 31692483 | G-T | HET | ||
| SBS | Chr1 | 31692484 | A-T | HET | ||
| SBS | Chr1 | 40938758 | C-T | Homo | ||
| SBS | Chr1 | 42438626 | G-T | Homo | ||
| SBS | Chr2 | 19803551 | C-T | HET | ||
| SBS | Chr2 | 25044580 | C-T | Homo | ||
| SBS | Chr3 | 22530776 | A-G | HET | ||
| SBS | Chr3 | 31549446 | A-T | HET | ||
| SBS | Chr3 | 35248813 | G-T | HET | ||
| SBS | Chr4 | 495505 | G-C | HET | ||
| SBS | Chr4 | 870320 | A-T | HET | ||
| SBS | Chr4 | 2000811 | C-T | HET | ||
| SBS | Chr4 | 17573885 | C-A | HET | ||
| SBS | Chr4 | 20110442 | T-C | HET | ||
| SBS | Chr4 | 27440708 | A-G | Homo | ||
| SBS | Chr5 | 10259527 | A-T | HET | ||
| SBS | Chr5 | 27219533 | C-T | HET | ||
| SBS | Chr6 | 11671292 | C-A | Homo | ||
| SBS | Chr6 | 27670172 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g45690 |
| SBS | Chr7 | 23709962 | C-T | HET | ||
| SBS | Chr7 | 28418906 | G-A | Homo | ||
| SBS | Chr8 | 1176394 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g02790 |
| SBS | Chr9 | 8763587 | G-T | Homo | ||
| SBS | Chr9 | 9035734 | G-T | Homo | ||
| SBS | Chr10 | 15484755 | A-G | HET | ||
| SBS | Chr11 | 13293507 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g23100 |
| SBS | Chr11 | 13293508 | T-C | Homo | ||
| SBS | Chr11 | 25233823 | T-G | HET | ||
| SBS | Chr12 | 10949752 | C-T | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 974258 | 974261 | 3 | LOC_Os06g02710 |
| Deletion | Chr1 | 6346254 | 6346255 | 1 | |
| Deletion | Chr10 | 11277800 | 11277814 | 14 | |
| Deletion | Chr10 | 12847657 | 12847658 | 1 | |
| Deletion | Chr7 | 14634725 | 14634731 | 6 | |
| Deletion | Chr7 | 14829610 | 14829613 | 3 | |
| Deletion | Chr1 | 16132882 | 16132883 | 1 | |
| Deletion | Chr7 | 16551001 | 16612000 | 60999 | 6 |
| Deletion | Chr12 | 16908923 | 16908937 | 14 | |
| Deletion | Chr2 | 19009001 | 19027000 | 17999 | 4 |
| Deletion | Chr5 | 26803071 | 26803072 | 1 |
Insertions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 6673571 | 6673574 | 4 | |
| Insertion | Chr6 | 21915870 | 21915871 | 2 | |
| Insertion | Chr7 | 26511502 | 26511503 | 2 | |
| Insertion | Chr11 | 301572 | 301574 | 3 | |
| Insertion | Chr3 | 7389703 | 7389748 | 46 | |
| Insertion | Chr5 | 12214362 | 12214362 | 1 | |
| Insertion | Chr7 | 11309599 | 11309599 | 1 | |
| Insertion | Chr7 | 12164891 | 12164896 | 6 | |
| Insertion | Chr10 | 317850 | 317853 | 4 | LOC_Os10g01490 |
| Insertion | Chr10 | 5097313 | 5097315 | 3 | |
| Insertion | Chr10 | 14007456 | 14007456 | 1 | |
| Insertion | Chr11 | 16554568 | 16554569 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 5562169 | 5563652 | LOC_Os04g10300 |
| Inversion | Chr2 | 19027065 | 19061462 | 2 |
| Inversion | Chr2 | 19041679 | 19061460 | LOC_Os02g32280 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 5173800 | Chr6 | 7992798 | LOC_Os08g08890 |
| Translocation | Chr11 | 17890250 | Chr9 | 4630672 | |
| Translocation | Chr8 | 18745849 | Chr3 | 18929781 | |
| Translocation | Chr6 | 22542295 | Chr2 | 2610258 | LOC_Os02g05420 |
| Translocation | Chr4 | 26202402 | Chr2 | 18481704 | LOC_Os04g44230 |